RNA id: TU126047


Basic Information

Item Value
RNA id TU126047
length 236
lncRNA type intronic
GC content 0.38
exon number 1
gene id G110928
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 1479094 ~ 1479329 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AAAAGTCGTTATTTTGTTTTTTTTGGCGCACAAACAATATTGTCACTTTATAATATTAAGGCAGAACCACTGAACTCACATGAACTGTTTTTAGTACCTTTATGGATCTTGAGAGAGGAAGTACCATTGCTGTCTATGTAGGCCTCACTGAGCCATCGGATTTAATCAAAAACACCTTAATTTGTGTTCCGAAGATGAACGAAGGTCTTACGGGTGTAGAACAACATGAGGGTGAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126014 lncRNA upstream 2734 1468184 ~ 1476360 (+) True G110897
TU126026 lncRNA upstream 91191 1387609 ~ 1387903 (+) True G110909
TU126025 lncRNA upstream 91553 1387338 ~ 1387541 (+) True G110908
TU126007 lncRNA upstream 98642 1380212 ~ 1380452 (+) True G110892
TU126006 lncRNA upstream 99182 1379678 ~ 1379912 (+) True G110891
TU126067 lncRNA downstream 35352 1514681 ~ 1516164 (+) True G110940
TU126077 lncRNA downstream 57624 1536953 ~ 1538262 (+) True G110950
TU126079 lncRNA downstream 63704 1543033 ~ 1543255 (+) True G110952
TU126081 lncRNA downstream 65803 1545132 ~ 1545347 (+) True G110954
TU126090 lncRNA downstream 96543 1575872 ~ 1576147 (+) True G110962
CI01000020_01447228_01456657.mRNA mRNA upstream 21499 1446404 ~ 1457595 (+) True CI01000020_01447228_01456657
CI01000020_01416902_01441420.mRNA mRNA upstream 37538 1416902 ~ 1441556 (+) True CI01000020_01416902_01441420
CI01000020_01400705_01401757.mRNA mRNA upstream 77012 1398296 ~ 1402082 (+) True CI01000020_01400705_01401757
CI01000020_01395424_01397266.mRNA mRNA upstream 81751 1395126 ~ 1397343 (+) True CI01000020_01395424_01397266
CI01000020_01383268_01384854.mRNA mRNA upstream 93053 1383268 ~ 1386041 (+) True CI01000020_01383268_01384854
CI01000020_01484806_01488530.mRNA mRNA downstream 5287 1484616 ~ 1489015 (+) True CI01000020_01484806_01488530
CI01000020_01500660_01504462.mRNA mRNA downstream 21331 1500660 ~ 1504827 (+) True CI01000020_01500660_01504462
CI01000020_01510968_01538886.mRNA mRNA downstream 30250 1509579 ~ 1539130 (+) True CI01000020_01510968_01538886
CI01000020_01585338_01604278.mRNA mRNA downstream 105535 1584864 ~ 1604586 (+) True CI01000020_01585338_01604278
CI01000020_01608261_01638242.mRNA mRNA downstream 128508 1607837 ~ 1638943 (+) True CI01000020_01608261_01638242
TU126005 other upstream 100745 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU125806 other upstream 392321 1068056 ~ 1086773 (+) True G110720
TU125804 other upstream 662584 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 1252246 180778 ~ 226848 (+) False G110589
TU126322 other downstream 964915 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 964915 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 1168182 2647511 ~ 2658913 (+) True G111183
TU128026 other downstream 1821842 3301171 ~ 3303730 (+) True G112679
TU128103 other downstream 2235052 3714381 ~ 3733586 (+) True G112753

Expression Profile