RNA id: TU126090


Basic Information

Item Value
RNA id TU126090
length 276
lncRNA type antisense_over
GC content 0.47
exon number 1
gene id G110962
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 1575872 ~ 1576147 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GACTGATCGTTATAGTTGCGCCGCCACTACTGCCGTGGATCCGCTCCTCGTCTACCAACGAGTCTGCACCTCCTCTACTGACCACGATACAGCCATTTTTTTTTTTCAAGTTGCGTGTGACGGTCGTTTAAAGCAAGTTTTTTCGCAAAGAAATGATACTGCGGTGGCTGTTACTGACTATTTAAATCTAGCGGGTTTGGTGTCTCGTGTTTCAAATCCAATGACGCTGGTAGTGATGATTCTCTCTGACCAATCAGTGATCTGCAGTGTTTCCGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126081 lncRNA upstream 30525 1545132 ~ 1545347 (+) True G110954
TU126079 lncRNA upstream 32617 1543033 ~ 1543255 (+) True G110952
TU126077 lncRNA upstream 37610 1536953 ~ 1538262 (+) True G110950
TU126067 lncRNA upstream 59708 1514681 ~ 1516164 (+) True G110940
TU126047 lncRNA upstream 96543 1479094 ~ 1479329 (+) True G110928
TU126122 lncRNA downstream 93293 1669440 ~ 1669856 (+) True G110989
TU126095 lncRNA downstream 139348 1715495 ~ 1725122 (+) True G110967
TU126167 lncRNA downstream 199847 1775994 ~ 1776484 (+) True G111028
TU126223 lncRNA downstream 448523 2024670 ~ 2024915 (+) True G111084
TU126183 lncRNA downstream 487907 2064054 ~ 2070761 (+) True G111044
CI01000020_01510968_01538886.mRNA mRNA upstream 36742 1509579 ~ 1539130 (+) True CI01000020_01510968_01538886
CI01000020_01500660_01504462.mRNA mRNA upstream 71045 1500660 ~ 1504827 (+) True CI01000020_01500660_01504462
CI01000020_01484806_01488530.mRNA mRNA upstream 86857 1484616 ~ 1489015 (+) True CI01000020_01484806_01488530
CI01000020_01447228_01456657.mRNA mRNA upstream 118277 1446404 ~ 1457595 (+) True CI01000020_01447228_01456657
CI01000020_01416902_01441420.mRNA mRNA upstream 134316 1416902 ~ 1441556 (+) True CI01000020_01416902_01441420
CI01000020_01585338_01604278.mRNA mRNA downstream 8717 1584864 ~ 1604586 (+) True CI01000020_01585338_01604278
CI01000020_01608261_01638242.mRNA mRNA downstream 31690 1607837 ~ 1638943 (+) True CI01000020_01608261_01638242
CI01000020_01647763_01658875.mRNA mRNA downstream 71077 1647224 ~ 1659574 (+) True CI01000020_01647763_01658875
CI01000020_01660231_01665929.mRNA mRNA downstream 83884 1660031 ~ 1666074 (+) True CI01000020_01660231_01665929
CI01000020_01684414_01696762.mRNA mRNA downstream 108267 1684414 ~ 1697096 (+) True CI01000020_01684414_01696762
TU126005 other upstream 197523 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU125806 other upstream 489099 1068056 ~ 1086773 (+) True G110720
TU125804 other upstream 759362 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 1349024 180778 ~ 226848 (+) False G110589
TU126322 other downstream 868097 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 868097 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 1071364 2647511 ~ 2658913 (+) True G111183
TU128026 other downstream 1725024 3301171 ~ 3303730 (+) True G112679
TU128103 other downstream 2138234 3714381 ~ 3733586 (+) True G112753

Expression Profile