RNA id: TU126288


Basic Information

Item Value
RNA id TU126288
length 222
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G111144
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 2329285 ~ 2329506 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACGGATTAGATGAAGTTTTCTGACAGCCGTAAATAATCATTTCACACCACCCCACCATCCACTTTAACACACACACACACATATAAAGAGGATTTACAAGGCAAACATACCCTAAGAGCAAAGTATCTTATCTAAAGATCTAGGGCAAGGTAGATGCACTTTCTCAAACATGTTGCGGAGCCACATCATTGTCCCAAACAGGTCTGACCTGAAGGAAAAAGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126285 lncRNA upstream 3793 2325268 ~ 2325492 (+) True G111141
TU126177 lncRNA upstream 99724 2228630 ~ 2229561 (+) True G111038
TU126188 lncRNA upstream 173198 2153800 ~ 2156087 (+) True G111049
TU126183 lncRNA upstream 258524 2064054 ~ 2070761 (+) True G111044
TU126223 lncRNA upstream 304370 2024670 ~ 2024915 (+) True G111084
TU126304 lncRNA downstream 45574 2375080 ~ 2376491 (+) True G111160
TU126308 lncRNA downstream 76725 2406231 ~ 2406463 (+) True G111164
TU126336 lncRNA downstream 190541 2520047 ~ 2521338 (+) True G111185
TU126368 lncRNA downstream 291869 2621375 ~ 2621629 (+) True G111212
TU126326 lncRNA downstream 292847 2622353 ~ 2626680 (+) True G111175
CI01000020_02292816_02297112.mRNA mRNA upstream 31455 2292359 ~ 2297830 (+) True CI01000020_02292816_02297112
CI01000020_02243585_02253875.mRNA mRNA upstream 74714 2243585 ~ 2254571 (+) True CI01000020_02243585_02253875
CI01000020_02233314_02238917.mRNA mRNA upstream 89396 2233314 ~ 2239889 (+) True CI01000020_02233314_02238917
CI01000020_02199397_02227367.mRNA mRNA upstream 101756 2198914 ~ 2227529 (+) True CI01000020_02199397_02227367
CI01000020_02179764_02185141.mRNA mRNA upstream 144119 2179419 ~ 2185166 (+) True CI01000020_02179764_02185141
CI01000020_02351020_02353651.mRNA mRNA downstream 21514 2351020 ~ 2354384 (+) True CI01000020_02351020_02353651
CI01000020_02386014_02399244.mRNA mRNA downstream 56286 2385792 ~ 2399354 (+) True CI01000020_02386014_02399244
CI01000020_02411139_02412253.mRNA mRNA downstream 80962 2410468 ~ 2413173 (+) True CI01000020_02411139_02412253
CI01000020_02416674_02427648.mRNA mRNA downstream 84429 2413935 ~ 2427878 (+) True CI01000020_02416674_02427648
CI01000020_02430803_02438850.mRNA mRNA downstream 100726 2430232 ~ 2439512 (+) True CI01000020_02430803_02438850
TU126005 other upstream 950936 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU125806 other upstream 1242512 1068056 ~ 1086773 (+) True G110720
TU125804 other upstream 1512775 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 2102437 180778 ~ 226848 (+) False G110589
TU126322 other downstream 114738 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 114738 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 318005 2647511 ~ 2658913 (+) True G111183
TU128026 other downstream 971665 3301171 ~ 3303730 (+) True G112679
TU128103 other downstream 1384875 3714381 ~ 3733586 (+) True G112753

Expression Profile