RNA id: TU126308


Basic Information

Item Value
RNA id TU126308
length 233
lncRNA type inter_gene
GC content 0.58
exon number 1
gene id G111164
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 2406231 ~ 2406463 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TGGGCACTGACGGACCTGGGCAGTAGAGCAAAGGTGAGTCTAGACCGTGAAGCAGTGGCCAGGGTAGCGCAGGCTGAGCAGGTAGCCAGTGTGGCGCAGGCTGGGCAGGTTGGGCAGACGACTTCCACGGCAGAGTAGAAGACCACCATAGCATATCAGATGAGACAGAAGACCACCATAGTAGATCAGATGAGGCAGAGGACCCCCAGGGCATATCTAGTGGAACAGGCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126304 lncRNA upstream 29740 2375080 ~ 2376491 (+) True G111160
TU126288 lncRNA upstream 76725 2329285 ~ 2329506 (+) True G111144
TU126285 lncRNA upstream 80739 2325268 ~ 2325492 (+) True G111141
TU126177 lncRNA upstream 176670 2228630 ~ 2229561 (+) True G111038
TU126188 lncRNA upstream 250144 2153800 ~ 2156087 (+) True G111049
TU126336 lncRNA downstream 113584 2520047 ~ 2521338 (+) True G111185
TU126368 lncRNA downstream 214912 2621375 ~ 2621629 (+) True G111212
TU126326 lncRNA downstream 215890 2622353 ~ 2626680 (+) True G111175
TU126372 lncRNA downstream 240545 2647008 ~ 2647283 (+) True G111216
TU126385 lncRNA downstream 297617 2704080 ~ 2716598 (+) True G111224
CI01000020_02386014_02399244.mRNA mRNA upstream 6877 2385792 ~ 2399354 (+) True CI01000020_02386014_02399244
CI01000020_02351020_02353651.mRNA mRNA upstream 51847 2351020 ~ 2354384 (+) True CI01000020_02351020_02353651
CI01000020_02292816_02297112.mRNA mRNA upstream 108401 2292359 ~ 2297830 (+) True CI01000020_02292816_02297112
CI01000020_02243585_02253875.mRNA mRNA upstream 151660 2243585 ~ 2254571 (+) True CI01000020_02243585_02253875
CI01000020_02233314_02238917.mRNA mRNA upstream 166342 2233314 ~ 2239889 (+) True CI01000020_02233314_02238917
CI01000020_02411139_02412253.mRNA mRNA downstream 4005 2410468 ~ 2413173 (+) True CI01000020_02411139_02412253
CI01000020_02416674_02427648.mRNA mRNA downstream 7472 2413935 ~ 2427878 (+) True CI01000020_02416674_02427648
CI01000020_02430803_02438850.mRNA mRNA downstream 23769 2430232 ~ 2439512 (+) True CI01000020_02430803_02438850
CI01000020_02444149_02444833.mRNA mRNA downstream 36815 2443278 ~ 2444944 (+) False CI01000020_02444149_02444833
CI01000020_02514166_02557008.mRNA mRNA downstream 107642 2514105 ~ 2557539 (+) True CI01000020_02514166_02557008
TU126005 other upstream 1027882 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU125806 other upstream 1319458 1068056 ~ 1086773 (+) True G110720
TU125804 other upstream 1589721 810899 ~ 816510 (+) True CI01000020_00810993_00815495
TU125672 other upstream 2179383 180778 ~ 226848 (+) False G110589
TU126322 other downstream 37781 2445064 ~ 2445556 (+) False G111173
TU126324 other downstream 37781 2445064 ~ 2449807 (+) True G111173
TU126334 other downstream 241048 2647511 ~ 2658913 (+) True G111183
TU128026 other downstream 894708 3301171 ~ 3303730 (+) True G112679
TU128103 other downstream 1307918 3714381 ~ 3733586 (+) True G112753

Expression Profile