Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU126336 |
| length | 1292 |
| lncRNA type | intronic |
| GC content | 0.36 |
| exon number | 1 |
| gene id | G111185 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 2520047 ~ 2521338 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU126308 | lncRNA | upstream | 113584 | 2406231 ~ 2406463 (+) | True | G111164 |
| TU126304 | lncRNA | upstream | 143556 | 2375080 ~ 2376491 (+) | True | G111160 |
| TU126288 | lncRNA | upstream | 190541 | 2329285 ~ 2329506 (+) | True | G111144 |
| TU126285 | lncRNA | upstream | 194555 | 2325268 ~ 2325492 (+) | True | G111141 |
| TU126177 | lncRNA | upstream | 290486 | 2228630 ~ 2229561 (+) | True | G111038 |
| TU126368 | lncRNA | downstream | 100037 | 2621375 ~ 2621629 (+) | True | G111212 |
| TU126326 | lncRNA | downstream | 101015 | 2622353 ~ 2626680 (+) | True | G111175 |
| TU126372 | lncRNA | downstream | 125670 | 2647008 ~ 2647283 (+) | True | G111216 |
| TU126385 | lncRNA | downstream | 182742 | 2704080 ~ 2716598 (+) | True | G111224 |
| TU126387 | lncRNA | downstream | 184654 | 2705992 ~ 2746048 (+) | False | G111225 |
| CI01000020_02444149_02444833.mRNA | mRNA | upstream | 75103 | 2443278 ~ 2444944 (+) | False | CI01000020_02444149_02444833 |
| CI01000020_02430803_02438850.mRNA | mRNA | upstream | 80535 | 2430232 ~ 2439512 (+) | True | CI01000020_02430803_02438850 |
| CI01000020_02416674_02427648.mRNA | mRNA | upstream | 92169 | 2413935 ~ 2427878 (+) | True | CI01000020_02416674_02427648 |
| CI01000020_02411139_02412253.mRNA | mRNA | upstream | 106874 | 2410468 ~ 2413173 (+) | True | CI01000020_02411139_02412253 |
| CI01000020_02386014_02399244.mRNA | mRNA | upstream | 120693 | 2385792 ~ 2399354 (+) | True | CI01000020_02386014_02399244 |
| CI01000020_02569281_02578301.mRNA | mRNA | downstream | 47275 | 2568613 ~ 2578841 (+) | True | CI01000020_02569281_02578301 |
| CI01000020_02627995_02631513.mRNA | mRNA | downstream | 106657 | 2627995 ~ 2631870 (+) | True | CI01000020_02627995_02631513 |
| CI01000020_02633932_02637797.mRNA | mRNA | downstream | 112594 | 2633932 ~ 2638006 (+) | True | CI01000020_02633932_02637797 |
| CI01000020_02865197_02919405.mRNA | mRNA | downstream | 343859 | 2865197 ~ 2919405 (+) | True | CI01000020_02865197_02919405 |
| CI01000020_02983105_03176041.mRNA | mRNA | downstream | 461767 | 2983105 ~ 3176041 (+) | True | CI01000020_02983105_03176041 |
| TU126324 | other | upstream | 70240 | 2445064 ~ 2449807 (+) | True | G111173 |
| TU126322 | other | upstream | 74491 | 2445064 ~ 2445556 (+) | False | G111173 |
| TU126005 | other | upstream | 1141698 | 1376369 ~ 1378349 (+) | True | CI01000020_01375811_01378288 |
| TU125806 | other | upstream | 1433274 | 1068056 ~ 1086773 (+) | True | G110720 |
| TU125804 | other | upstream | 1703537 | 810899 ~ 816510 (+) | True | CI01000020_00810993_00815495 |
| TU126334 | other | downstream | 126173 | 2647511 ~ 2658913 (+) | True | G111183 |
| TU128026 | other | downstream | 779833 | 3301171 ~ 3303730 (+) | True | G112679 |
| TU128103 | other | downstream | 1193043 | 3714381 ~ 3733586 (+) | True | G112753 |
| TU128448 | other | downstream | 1905320 | 4426658 ~ 4439762 (+) | True | G113050 |
| TU128442 | other | downstream | 2238674 | 4785073 ~ 4793261 (+) | True | G113044 |
