RNA id: TU126388


Basic Information

Item Value
RNA id TU126388
length 530
lncRNA type antisense_over
GC content 0.42
exon number 2
gene id G111225
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 2705992 ~ 2746048 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACTGTAAAACTTGATTTTCCTGCTAAGACAAAAACTGAGATCAAGCACCCTGCAATAAAGCAATAAAGCTTATCTGGAGAGAAGATCTCAAAGAAATAGCATAGGACAATGCCTTGCCCTCACACATCTACAGGAGGCAATAGCCCTCCCCCCAAAACACACACACCCTCCTTCCTTTCCCCCTGACTCAAGTCACTGAAAGTTCTCCAAGAAGTATAATGTATCTGGTGTATCTATTGTTTATTCCTTTCATGTTCGGTATCATTTTAAATGTCTCAGTGCGATTGGTAAAATGGTCTCAATTTCACAGCAGTCACTGGTATTATGAAGAAGATTGAAAACTAAGGAGAATTCTGTCCTCCTTTTGGGTGGTGTCACTTGTGAAAACCCACTCCTCTCCCCCCAAAACAGGTGTTGGTGTAATAAAAATTTACAATCCTTTTGTTCTGGTCTTGGTATATAAGGTAAAGTGCAAAGCAGTCAGGGGGGATTTTCTGTAGCCAGAAGCCCCCACACAGTGGTGGACAAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU126372 lncRNA upstream 66985 2647008 ~ 2647283 (+) True G111216
TU126326 lncRNA upstream 87588 2622353 ~ 2626680 (+) True G111175
TU126368 lncRNA upstream 92639 2621375 ~ 2621629 (+) True G111212
TU126336 lncRNA upstream 192930 2520047 ~ 2521338 (+) True G111185
TU126308 lncRNA upstream 307805 2406231 ~ 2406463 (+) True G111164
TU126410 lncRNA downstream 49987 2796035 ~ 2830200 (+) True G111245
TU126464 lncRNA downstream 69188 2815236 ~ 2815620 (+) True G111293
TU126498 lncRNA downstream 185253 2931301 ~ 2931690 (+) True G111324
TU126505 lncRNA downstream 191123 2937171 ~ 2937377 (+) True G111326
TU126510 lncRNA downstream 214811 2960859 ~ 2961067 (+) True G111331
CI01000020_02633932_02637797.mRNA mRNA upstream 76262 2633932 ~ 2638006 (+) True CI01000020_02633932_02637797
CI01000020_02627995_02631513.mRNA mRNA upstream 82398 2627995 ~ 2631870 (+) True CI01000020_02627995_02631513
CI01000020_02569281_02578301.mRNA mRNA upstream 135427 2568613 ~ 2578841 (+) True CI01000020_02569281_02578301
CI01000020_02514166_02557008.mRNA mRNA upstream 156729 2514105 ~ 2557539 (+) True CI01000020_02514166_02557008
CI01000020_02444149_02444833.mRNA mRNA upstream 269324 2443278 ~ 2444944 (+) False CI01000020_02444149_02444833
CI01000020_02865197_02919405.mRNA mRNA downstream 119149 2865197 ~ 2919405 (+) True CI01000020_02865197_02919405
CI01000020_02983105_03176041.mRNA mRNA downstream 237057 2983105 ~ 3176041 (+) True CI01000020_02983105_03176041
CI01000020_03189213_03235363.mRNA mRNA downstream 442057 3188105 ~ 3235432 (+) False CI01000020_03189213_03235363
CI01000020_03264878_03271412.mRNA mRNA downstream 518069 3264117 ~ 3272069 (+) True CI01000020_03264878_03271412
CI01000020_03343617_03348546.mRNA mRNA downstream 597569 3343617 ~ 3348555 (+) True CI01000020_03343617_03348546
TU126334 other upstream 55355 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 264461 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 268712 2445064 ~ 2445556 (+) False G111173
TU126005 other upstream 1335919 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU125806 other upstream 1627495 1068056 ~ 1086773 (+) True G110720
TU128026 other downstream 555123 3301171 ~ 3303730 (+) True G112679
TU128103 other downstream 968333 3714381 ~ 3733586 (+) True G112753
TU128448 other downstream 1680610 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 2013964 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 2060979 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453

Expression Profile