Item | Value |
---|---|
RNA id | TU126410 |
length | 614 |
lncRNA type | read_through |
GC content | 0.47 |
exon number | 2 |
gene id | G111245 |
representative | True |
Item | Value |
---|---|
chromosome id | CI01000020 |
NCBI id | null |
chromosome length | 7209782 |
location | 2796035 ~ 2830200 (+) |
genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
species | grasscarp (Ctenopharyngodon idella) |
id | name | namespace |
---|---|---|
GO:0016071 | mRNA metabolic process | biological_process |
GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
GO:0006397 | mRNA processing | biological_process |
GO:0000398 | mRNA splicing, via spliceosome | biological_process |
GO:0016607 | nuclear speck | cellular_component |
GO:0005681 | spliceosomal complex | cellular_component |
GO:0005685 | U1 snRNP | cellular_component |
id | description |
---|---|
ko03040 | Spliceosome |
RNA id | RNA type | direction | distance | location | representative | gene id |
---|---|---|---|---|---|---|
TU126387 | lncRNA | upstream | 49987 | 2705992 ~ 2746048 (+) | False | G111225 |
TU126388 | lncRNA | upstream | 49987 | 2714268 ~ 2746048 (+) | True | G111225 |
TU126385 | lncRNA | upstream | 79437 | 2704080 ~ 2716598 (+) | True | G111224 |
TU126372 | lncRNA | upstream | 148752 | 2647008 ~ 2647283 (+) | True | G111216 |
TU126326 | lncRNA | upstream | 169355 | 2622353 ~ 2626680 (+) | True | G111175 |
TU126498 | lncRNA | downstream | 101101 | 2931301 ~ 2931690 (+) | True | G111324 |
TU126505 | lncRNA | downstream | 106971 | 2937171 ~ 2937377 (+) | True | G111326 |
TU126510 | lncRNA | downstream | 130659 | 2960859 ~ 2961067 (+) | True | G111331 |
TU126459 | lncRNA | downstream | 173180 | 3003380 ~ 3014892 (+) | True | G111288 |
TU126458 | lncRNA | downstream | 199727 | 3029927 ~ 3067810 (+) | True | G111287 |
CI01000020_02633932_02637797.mRNA | mRNA | upstream | 158029 | 2633932 ~ 2638006 (+) | True | CI01000020_02633932_02637797 |
CI01000020_02627995_02631513.mRNA | mRNA | upstream | 164165 | 2627995 ~ 2631870 (+) | True | CI01000020_02627995_02631513 |
CI01000020_02569281_02578301.mRNA | mRNA | upstream | 217194 | 2568613 ~ 2578841 (+) | True | CI01000020_02569281_02578301 |
CI01000020_02514166_02557008.mRNA | mRNA | upstream | 238496 | 2514105 ~ 2557539 (+) | True | CI01000020_02514166_02557008 |
CI01000020_02444149_02444833.mRNA | mRNA | upstream | 351091 | 2443278 ~ 2444944 (+) | False | CI01000020_02444149_02444833 |
CI01000020_02865197_02919405.mRNA | mRNA | downstream | 34997 | 2865197 ~ 2919405 (+) | True | CI01000020_02865197_02919405 |
CI01000020_02983105_03176041.mRNA | mRNA | downstream | 152905 | 2983105 ~ 3176041 (+) | True | CI01000020_02983105_03176041 |
CI01000020_03189213_03235363.mRNA | mRNA | downstream | 357905 | 3188105 ~ 3235432 (+) | False | CI01000020_03189213_03235363 |
CI01000020_03264878_03271412.mRNA | mRNA | downstream | 433917 | 3264117 ~ 3272069 (+) | True | CI01000020_03264878_03271412 |
CI01000020_03343617_03348546.mRNA | mRNA | downstream | 513417 | 3343617 ~ 3348555 (+) | True | CI01000020_03343617_03348546 |
TU126334 | other | upstream | 137122 | 2647511 ~ 2658913 (+) | True | G111183 |
TU126324 | other | upstream | 346228 | 2445064 ~ 2449807 (+) | True | G111173 |
TU126322 | other | upstream | 350479 | 2445064 ~ 2445556 (+) | False | G111173 |
TU126005 | other | upstream | 1417686 | 1376369 ~ 1378349 (+) | True | CI01000020_01375811_01378288 |
TU125806 | other | upstream | 1709262 | 1068056 ~ 1086773 (+) | True | G110720 |
TU128026 | other | downstream | 470971 | 3301171 ~ 3303730 (+) | True | G112679 |
TU128103 | other | downstream | 884181 | 3714381 ~ 3733586 (+) | True | G112753 |
TU128448 | other | downstream | 1596458 | 4426658 ~ 4439762 (+) | True | G113050 |
TU128442 | other | downstream | 1929812 | 4785073 ~ 4793261 (+) | True | G113044 |
TU128430 | other | downstream | 1976827 | 4807027 ~ 4808872 (+) | False | CI01000020_04807118_04808453 |