RNA id: TU126410



Basic Information


Item Value
RNA id TU126410
length 614
lncRNA type read_through
GC content 0.47
exon number 2
gene id G111245
representative True

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 2796035 ~ 2830200 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GGGGTAGGTGGCCTTCATTGGCACTCACGGGAGAATGAAGGAGAAGAGACGGGAAGAGAAAAAATAACCTTCCCCCTCTGTGCAATTCAGAAGGGAAAACAATCAGACCGTGCTTTTGTACACTTGACCGGTAGGCAAATGCTGTTTGAACAGTTAGTCTAATAAACGGATCGACTAATGAAAGGGAAGAAGAGCTGGAAGAAGCAAGGATGAAAAACAAGGGTGTATTATCTTTCTATATTGTATATGCGAGTGTGTGTGTGCTTACTGTATAAAAGAAAACAAAAAAAGATACCTGTAGAACAGGTCTTTGAACTCCCAGGTTTTTCATAGTGTCAGCACTGGCCAGGATCTTGAGCGGGTCGGACACCTTGGTCACAGCCTCAATCTCCTTATTGGTCTCGGTGCGGACCTGGCTGAGGAACAGGTCATTGATGTAGTAGGTGAGGAAGGTGCGTAGCTGACATTGCTTGGCCTGAGCAGGACCCATACGGGACTCGATCTCCTGAATGAATCTAAGCAATGGCTGAAAGATGACCGTGATGTTTCTGGCTCCCGGTTTACACAGGAATTTAGTCTCTCCTCCCTCAATCAGGTTATCGTCAGCTCCACCT

Function


GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU126387 lncRNA upstream 49987 2705992 ~ 2746048 (+) False G111225
TU126388 lncRNA upstream 49987 2714268 ~ 2746048 (+) True G111225
TU126385 lncRNA upstream 79437 2704080 ~ 2716598 (+) True G111224
TU126372 lncRNA upstream 148752 2647008 ~ 2647283 (+) True G111216
TU126326 lncRNA upstream 169355 2622353 ~ 2626680 (+) True G111175
TU126498 lncRNA downstream 101101 2931301 ~ 2931690 (+) True G111324
TU126505 lncRNA downstream 106971 2937171 ~ 2937377 (+) True G111326
TU126510 lncRNA downstream 130659 2960859 ~ 2961067 (+) True G111331
TU126459 lncRNA downstream 173180 3003380 ~ 3014892 (+) True G111288
TU126458 lncRNA downstream 199727 3029927 ~ 3067810 (+) True G111287
CI01000020_02633932_02637797.mRNA mRNA upstream 158029 2633932 ~ 2638006 (+) True CI01000020_02633932_02637797
CI01000020_02627995_02631513.mRNA mRNA upstream 164165 2627995 ~ 2631870 (+) True CI01000020_02627995_02631513
CI01000020_02569281_02578301.mRNA mRNA upstream 217194 2568613 ~ 2578841 (+) True CI01000020_02569281_02578301
CI01000020_02514166_02557008.mRNA mRNA upstream 238496 2514105 ~ 2557539 (+) True CI01000020_02514166_02557008
CI01000020_02444149_02444833.mRNA mRNA upstream 351091 2443278 ~ 2444944 (+) False CI01000020_02444149_02444833
CI01000020_02865197_02919405.mRNA mRNA downstream 34997 2865197 ~ 2919405 (+) True CI01000020_02865197_02919405
CI01000020_02983105_03176041.mRNA mRNA downstream 152905 2983105 ~ 3176041 (+) True CI01000020_02983105_03176041
CI01000020_03189213_03235363.mRNA mRNA downstream 357905 3188105 ~ 3235432 (+) False CI01000020_03189213_03235363
CI01000020_03264878_03271412.mRNA mRNA downstream 433917 3264117 ~ 3272069 (+) True CI01000020_03264878_03271412
CI01000020_03343617_03348546.mRNA mRNA downstream 513417 3343617 ~ 3348555 (+) True CI01000020_03343617_03348546
TU126334 other upstream 137122 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 346228 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 350479 2445064 ~ 2445556 (+) False G111173
TU126005 other upstream 1417686 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU125806 other upstream 1709262 1068056 ~ 1086773 (+) True G110720
TU128026 other downstream 470971 3301171 ~ 3303730 (+) True G112679
TU128103 other downstream 884181 3714381 ~ 3733586 (+) True G112753
TU128448 other downstream 1596458 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 1929812 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 1976827 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453

Expression Profile