RNA id: TU128003


Basic Information

Item Value
RNA id TU128003
length 273
lncRNA type intronic
GC content 0.37
exon number 1
gene id G112659
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3209440 ~ 3209712 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGATTTTTTATTATGAACATAGGACTGACATGAAGGAAAATGCTAAATCTGAATGCAGGTAATAAACTCGCTCACTCAATCTCTTTCTCACAACACTCTTCTACATAATACAGTAAGCTTCAATGAACAATATCAATTGAGAACATACAGTTTATGTTGCTAAGAGTGGTTGCTAAGGGTGTTGTGCAGTGATACACAGAACCGTTGGGTGAAGCGGTCATAGCCGTGTTTTATCGTGAATAAAACACAGCTATTGACCAATCAGAATCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU127991 lncRNA upstream 10602 3194177 ~ 3198838 (+) True G112653
TU126458 lncRNA upstream 141630 3029927 ~ 3067810 (+) True G111287
TU126459 lncRNA upstream 194548 3003380 ~ 3014892 (+) True G111288
TU126510 lncRNA upstream 248373 2960859 ~ 2961067 (+) True G111331
TU126505 lncRNA upstream 272063 2937171 ~ 2937377 (+) True G111326
TU128046 lncRNA downstream 52750 3262462 ~ 3262672 (+) True G112699
TU128049 lncRNA downstream 74989 3284701 ~ 3284907 (+) True G112702
TU128034 lncRNA downstream 94093 3303805 ~ 3304620 (+) True G112687
TU128063 lncRNA downstream 113111 3322823 ~ 3325360 (+) True G112716
TU128028 lncRNA downstream 127857 3337569 ~ 3338192 (+) True G112681
CI01000020_02983105_03176041.mRNA mRNA upstream 33399 2983105 ~ 3176041 (+) True CI01000020_02983105_03176041
CI01000020_02865197_02919405.mRNA mRNA upstream 290035 2865197 ~ 2919405 (+) True CI01000020_02865197_02919405
CI01000020_02633932_02637797.mRNA mRNA upstream 571434 2633932 ~ 2638006 (+) True CI01000020_02633932_02637797
CI01000020_02627995_02631513.mRNA mRNA upstream 577570 2627995 ~ 2631870 (+) True CI01000020_02627995_02631513
CI01000020_02569281_02578301.mRNA mRNA upstream 630599 2568613 ~ 2578841 (+) True CI01000020_02569281_02578301
CI01000020_03264878_03271412.mRNA mRNA downstream 54405 3264117 ~ 3272069 (+) True CI01000020_03264878_03271412
CI01000020_03343617_03348546.mRNA mRNA downstream 133905 3343617 ~ 3348555 (+) True CI01000020_03343617_03348546
CI01000020_03379393_03391963.mRNA mRNA downstream 169681 3379393 ~ 3393102 (+) True CI01000020_03379393_03391963
CI01000020_03397866_03404516.mRNA mRNA downstream 188154 3397866 ~ 3404710 (+) True CI01000020_03397866_03404516
CI01000020_03405045_03408250.mRNA mRNA downstream 195333 3405045 ~ 3408273 (+) True CI01000020_03405045_03408250
TU126334 other upstream 550527 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 759633 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 763884 2445064 ~ 2445556 (+) False G111173
TU126005 other upstream 1831091 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU125806 other upstream 2122667 1068056 ~ 1086773 (+) True G110720
TU128026 other downstream 91459 3301171 ~ 3303730 (+) True G112679
TU128103 other downstream 504669 3714381 ~ 3733586 (+) True G112753
TU128448 other downstream 1216946 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 1550300 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 1597315 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453

Expression Profile