RNA id: TU128028


Basic Information

Item Value
RNA id TU128028
length 284
lncRNA type antisense_over
GC content 0.46
exon number 2
gene id G112681
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3337569 ~ 3338192 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAAAATATGGCTTGGCTCTAGAATGAAAACAACTCACATTTCTGGAAGTCCAATGTTGCTTGGATTGATGCGCAGAGAAAAGCCTGGCAACTAGAACACTTCAACATATCACAGTCTACATTGATCCAGCCGTACCGTGCACATCTCAGCGGCGAGAGCACACGGGGCTTTCCGGCCCATTTCAGACATGAGTAGGATTCTACTCTGTTGAAAAATGCTTCTTTGTTTGCTGCCTCACATGGAGCTTTCCCAAGGCCATTTGGAGACAGTGTGTTTGAATCCTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128063 lncRNA upstream 12209 3322823 ~ 3325360 (+) True G112716
TU128034 lncRNA upstream 32949 3303805 ~ 3304620 (+) True G112687
TU128049 lncRNA upstream 52662 3284701 ~ 3284907 (+) True G112702
TU128046 lncRNA upstream 74897 3262462 ~ 3262672 (+) True G112699
TU128003 lncRNA upstream 127857 3209440 ~ 3209712 (+) True G112659
TU128134 lncRNA downstream 145836 3484028 ~ 3484228 (+) True G112779
TU128137 lncRNA downstream 148179 3486371 ~ 3486626 (+) True G112782
TU128140 lncRNA downstream 154585 3492777 ~ 3493087 (+) True G112785
TU128141 lncRNA downstream 156057 3494249 ~ 3494964 (+) True G112786
TU128143 lncRNA downstream 157990 3496182 ~ 3496391 (+) True G112788
CI01000020_03264878_03271412.mRNA mRNA upstream 65500 3264117 ~ 3272069 (+) True CI01000020_03264878_03271412
CI01000020_03189213_03235363.mRNA mRNA upstream 102137 3188105 ~ 3235432 (+) False CI01000020_03189213_03235363
CI01000020_02983105_03176041.mRNA mRNA upstream 161528 2983105 ~ 3176041 (+) True CI01000020_02983105_03176041
CI01000020_02865197_02919405.mRNA mRNA upstream 418164 2865197 ~ 2919405 (+) True CI01000020_02865197_02919405
CI01000020_02633932_02637797.mRNA mRNA upstream 699563 2633932 ~ 2638006 (+) True CI01000020_02633932_02637797
CI01000020_03343617_03348546.mRNA mRNA downstream 5425 3343617 ~ 3348555 (+) True CI01000020_03343617_03348546
CI01000020_03379393_03391963.mRNA mRNA downstream 41201 3379393 ~ 3393102 (+) True CI01000020_03379393_03391963
CI01000020_03397866_03404516.mRNA mRNA downstream 59674 3397866 ~ 3404710 (+) True CI01000020_03397866_03404516
CI01000020_03405045_03408250.mRNA mRNA downstream 66853 3405045 ~ 3408273 (+) True CI01000020_03405045_03408250
CI01000020_03623678_03625344.mRNA mRNA downstream 285342 3623534 ~ 3626024 (+) True CI01000020_03623678_03625344
TU128026 other upstream 33839 3301171 ~ 3303730 (+) True G112679
TU126334 other upstream 678656 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 887762 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 892013 2445064 ~ 2445556 (+) False G111173
TU126005 other upstream 1959220 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU128103 other downstream 376189 3714381 ~ 3733586 (+) True G112753
TU128448 other downstream 1088466 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 1421820 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 1468835 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU128431 other downstream 1468835 4823772 ~ 4823786 (+) True G113036

Expression Profile