RNA id: TCONS_00001223


Basic Information

Item Value
RNA id TCONS_00001223
length 865
RNA type mRNA
GC content 0.48
exon number 4
gene id XLOC_000734
representative False

Chromosome Information

Item Value
chromosome id NC_007112.7
NCBI id CM002885.2
chromosome length 59578282
location 55137943 ~ 55145085 (+)
genome version GRCz11_2017_zebrafish_Genome
species zebrafish
(Danio rerio)

Sequence

GATCTGACTTTATCTGGAGACTTTTCCAAAGCCACAGGCAGTCACACGCTCTTCACAGAGGACAAACACCGCGACAGACGATGGCTGATCATGATCTGGTTCTGAAGTGCTGGGGAGCCGTGGAGGCCGATTATGCGGCTAACGGAGGAGAAGTTCTCAACCGTCTGTTCAAGGAGTATCCAGACACTCTGAAGCTCTTCCCCAAGTTTTCTGGGATTTCTCAGGGTGATCTGGCGGGAAGCCCGGCGGTGGCGGCTCATGGAGCGACCGTGCTCAAGAAGCTGGGCGAACTGCTGAAGGCGGGTCTGGACGCGGCCGGTCAAGGCGCCCTGAGGCGGGTCATGGACGCGGTCATCGGGGACATCGACGGATACTACAAGGAGATCGGATTTGCCGGTTAAAACGCTCTGAACTTCACCCACTCAACCAGATCTCAAATGGGAGTCATAAATAAAGCGCTTATCTTGTTATTGCCATTAGTGAATAGAGGTTACAGTGCAGCTAGTACACTTACACATTCTccacagaaaaaataaaacgTTAAAGCGCAAAAACTTGAATGAGCAGAGCCAATCACGTCGCGTTCAGAAAGTCAGCTGATCTGATGACGTCATAATGGTTCGTTAGGGTCTCAGgaggagcaaagagcatagaatcaccaagaggcgacactctagcgCAATTAggtaaacagccactagatggcgcggcggcCCTTCtgaaatgaaaactccaatagaacagcaGCAtaatataagtctgtaaaataaaaactattaaaagtgctgatgattgtgatagtaagtgttgtattatcGTCTTTCAGGTTGCATCTCAGccttaatgcatttttaaaataaataaa

Function

GO:

id name namespace
GO:0014823 response to activity biological_process
GO:0048565 digestive tract development biological_process
GO:0001570 vasculogenesis biological_process
GO:0015671 oxygen transport biological_process
GO:0001666 response to hypoxia biological_process
GO:0005575 cellular_component cellular_component
GO:0019825 oxygen binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0005344 oxygen carrier activity molecular_function
GO:0020037 heme binding molecular_function

KEGG:

id description
ko02000 Transporters

ZFIN:

id description
ZDB-GENE-040426-1430 Predicted to enable oxygen binding activity. Acts upstream of or within several processes, including response to activity; response to hypoxia; and vasculogenesis. Is expressed in several structures, including cardiovascular system; digestive system; epithelial cell; nervous system; and pharyngeal arch. Human ortholog(s) of this gene implicated in acute kidney failure. Orthologous to human MB (myoglobin).

Ensembl:

ensembl_id ENSDART00000150510

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TCONS_00001218 lncRNA upstream 49891 55085645 ~ 55088052 (+) True XLOC_000731
TCONS_00001217 lncRNA upstream 53080 55080817 ~ 55084863 (+) False XLOC_000731
TCONS_00003183 lncRNA upstream 152646 54959492 ~ 54985297 (+) False XLOC_000729
TCONS_00003184 lncRNA upstream 159168 54974195 ~ 54978775 (+) True XLOC_000729
TCONS_00001210 lncRNA upstream 231236 54905750 ~ 54906707 (+) True XLOC_000726
TCONS_00003187 lncRNA downstream 40092 55184764 ~ 55191262 (+) False XLOC_000735
TCONS_00003189 lncRNA downstream 40092 55184764 ~ 55191262 (+) False XLOC_000735
TCONS_00003188 lncRNA downstream 40092 55184764 ~ 55191262 (+) False XLOC_000735
TCONS_00003186 lncRNA downstream 40092 55184764 ~ 55191262 (+) False XLOC_000735
TCONS_00003185 lncRNA downstream 40092 55184764 ~ 55191262 (+) False XLOC_000735
TCONS_00001220 mRNA upstream 28029 55104376 ~ 55109914 (+) True XLOC_000732
TCONS_00001219 mRNA upstream 28071 55095314 ~ 55109872 (+) False XLOC_000732
TCONS_00001216 mRNA upstream 47956 55080797 ~ 55089987 (+) False XLOC_000731
TCONS_00001215 mRNA upstream 130720 55002583 ~ 55007223 (+) True XLOC_000730
TCONS_00001214 mRNA upstream 180145 54952540 ~ 54957798 (+) True XLOC_000728
TCONS_00001227 mRNA downstream 94488 55239160 ~ 55247253 (+) False XLOC_000736
TCONS_00001228 mRNA downstream 95038 55239710 ~ 55246945 (+) False XLOC_000736
TCONS_00001230 mRNA downstream 120040 55264712 ~ 55275813 (+) True XLOC_000737
TCONS_00001231 mRNA downstream 134452 55279124 ~ 55287260 (+) True XLOC_000738
TCONS_00001232 mRNA downstream 148752 55293424 ~ 55299173 (+) False XLOC_000739
TCONS_00001221 other upstream 9364 55128465 ~ 55128579 (+) True XLOC_000733
TCONS_00001186 other upstream 951787 54186039 ~ 54186156 (+) True XLOC_000710
TCONS_00001180 other upstream 1076733 54053104 ~ 54061210 (+) True XLOC_000705
TCONS_00001166 other upstream 1750062 53387765 ~ 53387881 (+) True XLOC_000690
TCONS_00001160 other upstream 1769909 53364510 ~ 53368034 (+) True XLOC_000689
TCONS_00001233 other downstream 148953 55293625 ~ 55297251 (+) False XLOC_000739
TCONS_00001304 other downstream 2203226 57347898 ~ 57355033 (+) False XLOC_000813
TCONS_00001335 other downstream 3015479 58160151 ~ 58173589 (+) True XLOC_000837
TCONS_00001394 other downstream 3986620 59131292 ~ 59131406 (+) True XLOC_000888

Expression Profile

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