RNA id: TU128145


Basic Information

Item Value
RNA id TU128145
length 420
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G112790
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3498805 ~ 3499224 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTGAGGTGTTGGCTGGATGAGGCTCTTTGGGGAAAGAACATCTAGTCTGAGATCAAACGTTATTGAGCCTGTCACTCTGCAGACACAAACAGGAGCGGTTTCACATCAGAGCAAGCAAAAAGCACTGCAGATTCCCGAGGGGGTGGCTTAAAAGGTAAAGCAAAAAGCAATGAAAGTGGATGACAACATGGACGTCACATAAGCGCTACGAGTCAACAGGGCACTTTGCTAATGGGAAACATTCTCACACCGAAACGCTCAGGAAGTACAAAAACAAAATCTTCAGTTTGCAGGGATAGAGGGACGGCCTTTGTGACATCAAGAAATATACACCCACTGTTTTGGCTCTTTCGGTAACTGTAATTTGCAGCAAATAATTTCATTTGTTGGGGTTTTACTAATGGCATGTGGGAAACCTAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128144 lncRNA upstream 1473 3497075 ~ 3497332 (+) True G112789
TU128143 lncRNA upstream 2414 3496182 ~ 3496391 (+) True G112788
TU128141 lncRNA upstream 3841 3494249 ~ 3494964 (+) True G112786
TU128140 lncRNA upstream 5718 3492777 ~ 3493087 (+) True G112785
TU128137 lncRNA upstream 12179 3486371 ~ 3486626 (+) True G112782
TU128121 lncRNA downstream 16908 3516132 ~ 3516505 (+) True G112766
TU128123 lncRNA downstream 56025 3555249 ~ 3555949 (+) True G112768
TU128115 lncRNA downstream 190232 3689456 ~ 3696142 (+) True G112760
TU128124 lncRNA downstream 197361 3696585 ~ 3697508 (+) True G112769
TU128161 lncRNA downstream 214008 3713232 ~ 3713845 (+) True G112806
CI01000020_03405045_03408250.mRNA mRNA upstream 90532 3405045 ~ 3408273 (+) True CI01000020_03405045_03408250
CI01000020_03397866_03404516.mRNA mRNA upstream 94095 3397866 ~ 3404710 (+) True CI01000020_03397866_03404516
CI01000020_03379393_03391963.mRNA mRNA upstream 105703 3379393 ~ 3393102 (+) True CI01000020_03379393_03391963
CI01000020_03343617_03348546.mRNA mRNA upstream 150250 3343617 ~ 3348555 (+) True CI01000020_03343617_03348546
CI01000020_03264878_03271412.mRNA mRNA upstream 226736 3264117 ~ 3272069 (+) True CI01000020_03264878_03271412
CI01000020_03623678_03625344.mRNA mRNA downstream 124310 3623534 ~ 3626024 (+) True CI01000020_03623678_03625344
CI01000020_03632947_03634207.mRNA mRNA downstream 133723 3632947 ~ 3634278 (+) True CI01000020_03632947_03634207
CI01000020_03660304_03682653.mRNA mRNA downstream 161080 3660304 ~ 3683035 (+) True CI01000020_03660304_03682653
CI01000020_03761716_03806609.mRNA mRNA downstream 262492 3761716 ~ 3806914 (+) True CI01000020_03761716_03806609
CI01000020_03840431_03846507.mRNA mRNA downstream 340378 3839602 ~ 3847229 (+) True CI01000020_03840431_03846507
TU128026 other upstream 195075 3301171 ~ 3303730 (+) True G112679
TU126334 other upstream 839892 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 1048998 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 1053249 2445064 ~ 2445556 (+) False G111173
TU126005 other upstream 2120456 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU128103 other downstream 215157 3714381 ~ 3733586 (+) True G112753
TU128448 other downstream 927434 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 1260788 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 1307803 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU128431 other downstream 1307803 4823772 ~ 4823786 (+) True G113036

Expression Profile