RNA id: TU128161


Basic Information

Item Value
RNA id TU128161
length 614
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G112806
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3713232 ~ 3713845 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACCACACCTTAACACATAGACTAAAAGTCACTAAGCTTTCTAAAATGTGCATTAAATTTGAACAGTTTTTAACCTATGGCATCTTTAAAATTGGTGCTTATGTTGTGTGATGCTGAAAAAATAGCACTGTAACAGTCAAACATCTGCCAACATAGAAAACATTTTTTTTTAAAAGGACAGATTGTATGAATGGCCCATAGTCTGGTTGGTTAATATAGCCAAGATTAGCTGTAACGCAATAAAATGTCCATGAATGGAAACTGCAACCAAGTGTTTTGCTCGATCTTCCTGCACAAATTATATTAACCAGTCACGTGCTAACATTCCTAGCATCACATTCACACAAAACACTGGTTACCCTCTATCAATGTCAAATACAAATGGGACAAAATAATAAGTAATGGATTAAAGTGGAAAAGCCATATTCTGGGTTTGCTCTGTTGGACAGGATTCTGAGTCAGGTAGTTTTCCTTGTCTGTGGGGGTCTGTGGCCCGCAGGCTCGCTGCTGCTGATTTTGGCTTCCTGGGAGGTCTGGGAGGTCCGCCTTCACTGCCTTGTGTTCTGGATGGTCACGGGTGGATGGAGGCTTTACTCACTGCACATTGAGGTACTG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128124 lncRNA upstream 15724 3696585 ~ 3697508 (+) True G112769
TU128115 lncRNA upstream 17090 3689456 ~ 3696142 (+) True G112760
TU128123 lncRNA upstream 157283 3555249 ~ 3555949 (+) True G112768
TU128121 lncRNA upstream 196727 3516132 ~ 3516505 (+) True G112766
TU128145 lncRNA upstream 214008 3498805 ~ 3499224 (+) True G112790
TU128175 lncRNA downstream 32537 3746382 ~ 3746615 (+) True G112819
TU128183 lncRNA downstream 44016 3757861 ~ 3758199 (+) True G112827
TU128206 lncRNA downstream 143913 3857758 ~ 3858264 (+) True G112848
TU128221 lncRNA downstream 262026 3975871 ~ 3985375 (+) True G112861
TU128259 lncRNA downstream 279176 3993021 ~ 4051603 (+) True G112897
CI01000020_03660304_03682653.mRNA mRNA upstream 30197 3660304 ~ 3683035 (+) True CI01000020_03660304_03682653
CI01000020_03632947_03634207.mRNA mRNA upstream 78954 3632947 ~ 3634278 (+) True CI01000020_03632947_03634207
CI01000020_03623678_03625344.mRNA mRNA upstream 87208 3623534 ~ 3626024 (+) True CI01000020_03623678_03625344
CI01000020_03405045_03408250.mRNA mRNA upstream 304959 3405045 ~ 3408273 (+) True CI01000020_03405045_03408250
CI01000020_03397866_03404516.mRNA mRNA upstream 308522 3397866 ~ 3404710 (+) True CI01000020_03397866_03404516
CI01000020_03761716_03806609.mRNA mRNA downstream 47871 3761716 ~ 3806914 (+) True CI01000020_03761716_03806609
CI01000020_03840431_03846507.mRNA mRNA downstream 125757 3839602 ~ 3847229 (+) True CI01000020_03840431_03846507
CI01000020_03848839_03853256.mRNA mRNA downstream 134994 3848839 ~ 3853630 (+) True CI01000020_03848839_03853256
CI01000020_03957225_03966342.mRNA mRNA downstream 243380 3957225 ~ 3966942 (+) True CI01000020_03957225_03966342
CI01000020_03985890_03988606.mRNA mRNA downstream 272045 3985890 ~ 3988936 (+) True CI01000020_03985890_03988606
TU128026 other upstream 409502 3301171 ~ 3303730 (+) True G112679
TU126334 other upstream 1054319 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 1263425 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 1267676 2445064 ~ 2445556 (+) False G111173
TU126005 other upstream 2334883 1376369 ~ 1378349 (+) True CI01000020_01375811_01378288
TU128103 other downstream 536 3714381 ~ 3733586 (+) True G112753
TU128448 other downstream 712813 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 1046167 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 1093182 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU128431 other downstream 1093182 4823772 ~ 4823786 (+) True G113036

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00053607 True 767 lncRNA 0.42 2 NC_007115.7 14399472 ~ 14408298 (+)