RNA id: TU128175


Basic Information

Item Value
RNA id TU128175
length 234
lncRNA type inter_gene
GC content 0.45
exon number 1
gene id G112819
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3746382 ~ 3746615 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTCTTTCAAAGCTTTGTCCTCCTTGAACATGACAGCGCACCTGATTCTGAGACATGTTCTGGTAAAATGGTAAAGTTCAGGCAGAAGCACTGGCCCCAGGCTGAGACTGAACTCTTTCTAACAGGAGGTCTTTCTGTCCTACTGTATGAAGAGTAACTTGTCATTATATGCAGAGGGCAAGCTAGAGACACACACAGCTCCCATCCAGAATACTCAAAGCCAGACGTAATTTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128161 lncRNA upstream 32537 3713232 ~ 3713845 (+) True G112806
TU128124 lncRNA upstream 48874 3696585 ~ 3697508 (+) True G112769
TU128115 lncRNA upstream 50240 3689456 ~ 3696142 (+) True G112760
TU128123 lncRNA upstream 190433 3555249 ~ 3555949 (+) True G112768
TU128121 lncRNA upstream 229877 3516132 ~ 3516505 (+) True G112766
TU128183 lncRNA downstream 11246 3757861 ~ 3758199 (+) True G112827
TU128206 lncRNA downstream 111143 3857758 ~ 3858264 (+) True G112848
TU128221 lncRNA downstream 229256 3975871 ~ 3985375 (+) True G112861
TU128259 lncRNA downstream 246406 3993021 ~ 4051603 (+) True G112897
TU128273 lncRNA downstream 313286 4059901 ~ 4060168 (+) True G112911
CI01000020_03660304_03682653.mRNA mRNA upstream 63347 3660304 ~ 3683035 (+) True CI01000020_03660304_03682653
CI01000020_03632947_03634207.mRNA mRNA upstream 112104 3632947 ~ 3634278 (+) True CI01000020_03632947_03634207
CI01000020_03623678_03625344.mRNA mRNA upstream 120358 3623534 ~ 3626024 (+) True CI01000020_03623678_03625344
CI01000020_03405045_03408250.mRNA mRNA upstream 338109 3405045 ~ 3408273 (+) True CI01000020_03405045_03408250
CI01000020_03397866_03404516.mRNA mRNA upstream 341672 3397866 ~ 3404710 (+) True CI01000020_03397866_03404516
CI01000020_03761716_03806609.mRNA mRNA downstream 15101 3761716 ~ 3806914 (+) True CI01000020_03761716_03806609
CI01000020_03840431_03846507.mRNA mRNA downstream 92987 3839602 ~ 3847229 (+) True CI01000020_03840431_03846507
CI01000020_03848839_03853256.mRNA mRNA downstream 102224 3848839 ~ 3853630 (+) True CI01000020_03848839_03853256
CI01000020_03957225_03966342.mRNA mRNA downstream 210610 3957225 ~ 3966942 (+) True CI01000020_03957225_03966342
CI01000020_03985890_03988606.mRNA mRNA downstream 239275 3985890 ~ 3988936 (+) True CI01000020_03985890_03988606
TU128103 other upstream 12796 3714381 ~ 3733586 (+) True G112753
TU128026 other upstream 442652 3301171 ~ 3303730 (+) True G112679
TU126334 other upstream 1087469 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 1296575 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 1300826 2445064 ~ 2445556 (+) False G111173
TU128448 other downstream 680043 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 1013397 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 1060412 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU128431 other downstream 1060412 4823772 ~ 4823786 (+) True G113036
TU128432 other downstream 1060412 4807027 ~ 4809414 (+) False CI01000020_04807118_04808453

Expression Profile