RNA id: TU128183


Basic Information

Item Value
RNA id TU128183
length 239
lncRNA type inter_gene
GC content 0.47
exon number 2
gene id G112827
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 3757861 ~ 3758199 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GAAAATCTATGGGGTATTGTGAAGAGGAAGATGCGATATGCCAGACCCAACAATGCAGAAGAGCTGAAGGCCACTGTCAGAGCAACCTGGGCTCTTATAACACCTGAACAGTGCCACAGACTGATCGACTCCATGCCACGCCGCATTGCTGCAGTAATTCAGGCAAAAGGAGCCCCAACTAAGTATTGAGTGCTGTACATGCTCATACTTTTCATGTTCATACTTTTCAGTTGGCCAAG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128175 lncRNA upstream 11246 3746382 ~ 3746615 (+) True G112819
TU128161 lncRNA upstream 44016 3713232 ~ 3713845 (+) True G112806
TU128124 lncRNA upstream 60353 3696585 ~ 3697508 (+) True G112769
TU128115 lncRNA upstream 61719 3689456 ~ 3696142 (+) True G112760
TU128123 lncRNA upstream 201912 3555249 ~ 3555949 (+) True G112768
TU128206 lncRNA downstream 99559 3857758 ~ 3858264 (+) True G112848
TU128221 lncRNA downstream 217672 3975871 ~ 3985375 (+) True G112861
TU128259 lncRNA downstream 234822 3993021 ~ 4051603 (+) True G112897
TU128273 lncRNA downstream 301702 4059901 ~ 4060168 (+) True G112911
TU128281 lncRNA downstream 314223 4072422 ~ 4072638 (+) True G112919
CI01000020_03660304_03682653.mRNA mRNA upstream 74826 3660304 ~ 3683035 (+) True CI01000020_03660304_03682653
CI01000020_03632947_03634207.mRNA mRNA upstream 123583 3632947 ~ 3634278 (+) True CI01000020_03632947_03634207
CI01000020_03623678_03625344.mRNA mRNA upstream 131837 3623534 ~ 3626024 (+) True CI01000020_03623678_03625344
CI01000020_03405045_03408250.mRNA mRNA upstream 349588 3405045 ~ 3408273 (+) True CI01000020_03405045_03408250
CI01000020_03397866_03404516.mRNA mRNA upstream 353151 3397866 ~ 3404710 (+) True CI01000020_03397866_03404516
CI01000020_03761716_03806609.mRNA mRNA downstream 3517 3761716 ~ 3806914 (+) True CI01000020_03761716_03806609
CI01000020_03840431_03846507.mRNA mRNA downstream 81403 3839602 ~ 3847229 (+) True CI01000020_03840431_03846507
CI01000020_03848839_03853256.mRNA mRNA downstream 90640 3848839 ~ 3853630 (+) True CI01000020_03848839_03853256
CI01000020_03957225_03966342.mRNA mRNA downstream 199026 3957225 ~ 3966942 (+) True CI01000020_03957225_03966342
CI01000020_03985890_03988606.mRNA mRNA downstream 227691 3985890 ~ 3988936 (+) True CI01000020_03985890_03988606
TU128103 other upstream 24275 3714381 ~ 3733586 (+) True G112753
TU128026 other upstream 454131 3301171 ~ 3303730 (+) True G112679
TU126334 other upstream 1098948 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 1308054 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 1312305 2445064 ~ 2445556 (+) False G111173
TU128448 other downstream 668459 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 1001813 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 1048828 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU128431 other downstream 1048828 4823772 ~ 4823786 (+) True G113036
TU128432 other downstream 1048828 4807027 ~ 4809414 (+) False CI01000020_04807118_04808453

Expression Profile