Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU128221 |
| length | 904 |
| lncRNA type | antisense_over |
| GC content | 0.54 |
| exon number | 9 |
| gene id | G112861 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 3975871 ~ 3985375 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU128206 | lncRNA | upstream | 117607 | 3857758 ~ 3858264 (+) | True | G112848 |
| TU128183 | lncRNA | upstream | 217672 | 3757861 ~ 3758199 (+) | True | G112827 |
| TU128175 | lncRNA | upstream | 229256 | 3746382 ~ 3746615 (+) | True | G112819 |
| TU128161 | lncRNA | upstream | 262026 | 3713232 ~ 3713845 (+) | True | G112806 |
| TU128124 | lncRNA | upstream | 278363 | 3696585 ~ 3697508 (+) | True | G112769 |
| TU128259 | lncRNA | downstream | 7646 | 3993021 ~ 4051603 (+) | True | G112897 |
| TU128273 | lncRNA | downstream | 74526 | 4059901 ~ 4060168 (+) | True | G112911 |
| TU128281 | lncRNA | downstream | 87047 | 4072422 ~ 4072638 (+) | True | G112919 |
| TU128294 | lncRNA | downstream | 105830 | 4091205 ~ 4094953 (+) | False | G112928 |
| TU128295 | lncRNA | downstream | 105830 | 4091205 ~ 4100700 (+) | False | G112928 |
| CI01000020_03957225_03966342.mRNA | mRNA | upstream | 8929 | 3957225 ~ 3966942 (+) | True | CI01000020_03957225_03966342 |
| CI01000020_03848839_03853256.mRNA | mRNA | upstream | 122241 | 3848839 ~ 3853630 (+) | True | CI01000020_03848839_03853256 |
| CI01000020_03840431_03846507.mRNA | mRNA | upstream | 128642 | 3839602 ~ 3847229 (+) | True | CI01000020_03840431_03846507 |
| CI01000020_03761716_03806609.mRNA | mRNA | upstream | 168957 | 3761716 ~ 3806914 (+) | True | CI01000020_03761716_03806609 |
| CI01000020_03660304_03682653.mRNA | mRNA | upstream | 292836 | 3660304 ~ 3683035 (+) | True | CI01000020_03660304_03682653 |
| CI01000020_03985890_03988606.mRNA | mRNA | downstream | 515 | 3985890 ~ 3988936 (+) | True | CI01000020_03985890_03988606 |
| CI01000020_03989813_04001907.mRNA | mRNA | downstream | 4438 | 3989813 ~ 4002822 (+) | True | CI01000020_03989813_04001907 |
| CI01000020_04005946_04011338.mRNA | mRNA | downstream | 20364 | 4005739 ~ 4011483 (+) | True | CI01000020_04005946_04011338 |
| CI01000020_04175433_04175851.mRNA | mRNA | downstream | 190022 | 4175397 ~ 4175851 (+) | True | CI01000020_04175433_04175851 |
| CI01000020_04186824_04192668.mRNA | mRNA | downstream | 201043 | 4186418 ~ 4192880 (+) | True | CI01000020_04186824_04192668 |
| TU128103 | other | upstream | 242285 | 3714381 ~ 3733586 (+) | True | G112753 |
| TU128026 | other | upstream | 672141 | 3301171 ~ 3303730 (+) | True | G112679 |
| TU126334 | other | upstream | 1316958 | 2647511 ~ 2658913 (+) | True | G111183 |
| TU126324 | other | upstream | 1526064 | 2445064 ~ 2449807 (+) | True | G111173 |
| TU126322 | other | upstream | 1530315 | 2445064 ~ 2445556 (+) | False | G111173 |
| TU128448 | other | downstream | 441283 | 4426658 ~ 4439762 (+) | True | G113050 |
| TU128442 | other | downstream | 774637 | 4785073 ~ 4793261 (+) | True | G113044 |
| TU128430 | other | downstream | 821652 | 4807027 ~ 4808872 (+) | False | CI01000020_04807118_04808453 |
| TU128431 | other | downstream | 821652 | 4823772 ~ 4823786 (+) | True | G113036 |
| TU128432 | other | downstream | 821652 | 4807027 ~ 4809414 (+) | False | CI01000020_04807118_04808453 |
