RNA id: TU128273


Basic Information

Item Value
RNA id TU128273
length 268
lncRNA type inter_gene
GC content 0.50
exon number 1
gene id G112911
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4059901 ~ 4060168 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AACAGAGCTGCGTTACCTCATACTCATGACCGGAAAAGCGGAAGCAGCGCCGGCGACTGTGTCATAATAAAAGTTCCACTGCTCGTGAAGCGTGTGTTGCGCAATCGCTCCAGCGGCCTCGTTCAGCTCCCACAACACTCGGTCCTGCTCTGCTTCATACTACAATAACGTTAATAATCACATCCATGAACATTCTTCCTGAGTCCTATCCCGATTGTTTCCACCGGCTGTGATGTGAATCACATGTCACATGTCCCAAGATTCCGCG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128259 lncRNA upstream 8298 3993021 ~ 4051603 (+) True G112897
TU128221 lncRNA upstream 74526 3975871 ~ 3985375 (+) True G112861
TU128206 lncRNA upstream 201637 3857758 ~ 3858264 (+) True G112848
TU128183 lncRNA upstream 301702 3757861 ~ 3758199 (+) True G112827
TU128175 lncRNA upstream 313286 3746382 ~ 3746615 (+) True G112819
TU128281 lncRNA downstream 12254 4072422 ~ 4072638 (+) True G112919
TU128294 lncRNA downstream 31037 4091205 ~ 4094953 (+) False G112928
TU128295 lncRNA downstream 31037 4091205 ~ 4100700 (+) False G112928
TU128290 lncRNA downstream 34168 4094336 ~ 4094953 (+) True G112928
TU128317 lncRNA downstream 43137 4103305 ~ 4159120 (+) True G112941
CI01000020_04005946_04011338.mRNA mRNA upstream 48418 4005739 ~ 4011483 (+) True CI01000020_04005946_04011338
CI01000020_03989813_04001907.mRNA mRNA upstream 57079 3989813 ~ 4002822 (+) True CI01000020_03989813_04001907
CI01000020_03985890_03988606.mRNA mRNA upstream 70965 3985890 ~ 3988936 (+) True CI01000020_03985890_03988606
CI01000020_03957225_03966342.mRNA mRNA upstream 92959 3957225 ~ 3966942 (+) True CI01000020_03957225_03966342
CI01000020_03848839_03853256.mRNA mRNA upstream 206271 3848839 ~ 3853630 (+) True CI01000020_03848839_03853256
CI01000020_04175433_04175851.mRNA mRNA downstream 115229 4175397 ~ 4175851 (+) True CI01000020_04175433_04175851
CI01000020_04186824_04192668.mRNA mRNA downstream 126250 4186418 ~ 4192880 (+) True CI01000020_04186824_04192668
CI01000020_04213624_04215676.mRNA mRNA downstream 153361 4213529 ~ 4216493 (+) True CI01000020_04213624_04215676
CI01000020_04226010_04238699.mRNA mRNA downstream 164874 4225042 ~ 4238923 (+) True CI01000020_04226010_04238699
CI01000020_04240295_04242117.mRNA mRNA downstream 180023 4240191 ~ 4242373 (+) True CI01000020_04240295_04242117
TU128103 other upstream 326315 3714381 ~ 3733586 (+) True G112753
TU128026 other upstream 756171 3301171 ~ 3303730 (+) True G112679
TU126334 other upstream 1400988 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 1610094 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 1614345 2445064 ~ 2445556 (+) False G111173
TU128448 other downstream 366490 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 699844 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 746859 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU128431 other downstream 746859 4823772 ~ 4823786 (+) True G113036
TU128432 other downstream 746859 4807027 ~ 4809414 (+) False CI01000020_04807118_04808453

Expression Profile