RNA id: TU128281


Basic Information

Item Value
RNA id TU128281
length 217
lncRNA type inter_gene
GC content 0.37
exon number 1
gene id G112919
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4072422 ~ 4072638 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTTTGAAATCGCCCATCACTATATATTGTTGAATAAAGACGTTATTTGGTTTTTTTTGGTGCACAAAAAGTATTCTCGTCGCTTCATAACATGAAGGTTGAACCACTGTAGTCACATGAACTGTTTTAAATATGTCTTTAGTAGCTTTCTGGGCATCTGAAAGTGTTAATTATCTTGCTGGCAATGGAGGCCTCACTGAGCCATCGGATTTCATCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128273 lncRNA upstream 12254 4059901 ~ 4060168 (+) True G112911
TU128259 lncRNA upstream 20819 3993021 ~ 4051603 (+) True G112897
TU128221 lncRNA upstream 87047 3975871 ~ 3985375 (+) True G112861
TU128206 lncRNA upstream 214158 3857758 ~ 3858264 (+) True G112848
TU128183 lncRNA upstream 314223 3757861 ~ 3758199 (+) True G112827
TU128294 lncRNA downstream 18567 4091205 ~ 4094953 (+) False G112928
TU128295 lncRNA downstream 18567 4091205 ~ 4100700 (+) False G112928
TU128290 lncRNA downstream 21698 4094336 ~ 4094953 (+) True G112928
TU128317 lncRNA downstream 30667 4103305 ~ 4159120 (+) True G112941
TU128331 lncRNA downstream 62506 4135144 ~ 4136916 (+) True G112955
CI01000020_04005946_04011338.mRNA mRNA upstream 60939 4005739 ~ 4011483 (+) True CI01000020_04005946_04011338
CI01000020_03989813_04001907.mRNA mRNA upstream 69600 3989813 ~ 4002822 (+) True CI01000020_03989813_04001907
CI01000020_03985890_03988606.mRNA mRNA upstream 83486 3985890 ~ 3988936 (+) True CI01000020_03985890_03988606
CI01000020_03957225_03966342.mRNA mRNA upstream 105480 3957225 ~ 3966942 (+) True CI01000020_03957225_03966342
CI01000020_03848839_03853256.mRNA mRNA upstream 218792 3848839 ~ 3853630 (+) True CI01000020_03848839_03853256
CI01000020_04175433_04175851.mRNA mRNA downstream 102759 4175397 ~ 4175851 (+) True CI01000020_04175433_04175851
CI01000020_04186824_04192668.mRNA mRNA downstream 113780 4186418 ~ 4192880 (+) True CI01000020_04186824_04192668
CI01000020_04213624_04215676.mRNA mRNA downstream 140891 4213529 ~ 4216493 (+) True CI01000020_04213624_04215676
CI01000020_04226010_04238699.mRNA mRNA downstream 152404 4225042 ~ 4238923 (+) True CI01000020_04226010_04238699
CI01000020_04240295_04242117.mRNA mRNA downstream 167553 4240191 ~ 4242373 (+) True CI01000020_04240295_04242117
TU128103 other upstream 338836 3714381 ~ 3733586 (+) True G112753
TU128026 other upstream 768692 3301171 ~ 3303730 (+) True G112679
TU126334 other upstream 1413509 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 1622615 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 1626866 2445064 ~ 2445556 (+) False G111173
TU128448 other downstream 354020 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 687374 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 734389 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU128431 other downstream 734389 4823772 ~ 4823786 (+) True G113036
TU128432 other downstream 734389 4807027 ~ 4809414 (+) False CI01000020_04807118_04808453

Expression Profile