RNA id: TU128463


Basic Information

Item Value
RNA id TU128463
length 293
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G113065
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 4381021 ~ 4381313 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTTAGTTCACCCAAAAATGAAAATTCTGTCATTAATTACTCACCCTTGTGCCGTTTTACACCCGTAAGACCTTCGTTGATCTTCGGAACACAAATTGAGATATTTTTGTTTAAATCCGATGGCTCCGTGAGGCCTACATAGGGAGCAATGACATTTCCTCTCTCAAGATCCATAAAGGTACTAAAAACATATTTAAATCAGTTCATGTGAGTACAGTGGTTCAATATTAATATTATAAAGCTACGAGAATATTTTTGGTGCGCCAAAAAAAACCAAAATAACGACTTATTTAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU128461 lncRNA upstream 8787 4371891 ~ 4372234 (+) True G113063
TU128305 lncRNA upstream 157497 4222665 ~ 4223524 (+) True G112935
TU128367 lncRNA upstream 168100 4212678 ~ 4212921 (+) True G112984
TU128365 lncRNA upstream 170120 4210666 ~ 4210901 (+) True G112982
TU128363 lncRNA upstream 170932 4209627 ~ 4210089 (+) True G112980
TU128465 lncRNA downstream 21870 4403183 ~ 4408822 (+) True G113067
TU128446 lncRNA downstream 28199 4409512 ~ 4415205 (+) True G113048
TU128458 lncRNA downstream 203755 4585068 ~ 4591113 (+) True G113060
TU128467 lncRNA downstream 298976 4680289 ~ 4680672 (+) True G113069
TU128455 lncRNA downstream 312542 4693855 ~ 4701724 (+) True G113057
CI01000020_04279888_04282279.mRNA mRNA upstream 98474 4279771 ~ 4282547 (+) True CI01000020_04279888_04282279
CI01000020_04273916_04275725.mRNA mRNA upstream 104914 4273738 ~ 4276107 (+) True CI01000020_04273916_04275725
CI01000020_04266512_04267515.mRNA mRNA upstream 113241 4266396 ~ 4267780 (+) True CI01000020_04266512_04267515
CI01000020_04240295_04242117.mRNA mRNA upstream 138648 4240191 ~ 4242373 (+) True CI01000020_04240295_04242117
CI01000020_04226010_04238699.mRNA mRNA upstream 142098 4225042 ~ 4238923 (+) True CI01000020_04226010_04238699
CI01000020_04446676_04465745.mRNA mRNA downstream 62933 4444246 ~ 4466188 (+) True CI01000020_04446676_04465745
CI01000020_04496296_04500632.mRNA mRNA downstream 114808 4496121 ~ 4501039 (+) True CI01000020_04496296_04500632
CI01000020_04540238_04552388.mRNA mRNA downstream 157885 4539198 ~ 4552553 (+) True CI01000020_04540238_04552388
CI01000020_04593462_04636463.mRNA mRNA downstream 212149 4593462 ~ 4636472 (+) True CI01000020_04593462_04636463
CI01000020_04646413_04669776.mRNA mRNA downstream 264771 4646084 ~ 4670074 (+) True CI01000020_04646413_04669776
TU128103 other upstream 647435 3714381 ~ 3733586 (+) True G112753
TU128026 other upstream 1077291 3301171 ~ 3303730 (+) True G112679
TU126334 other upstream 1722108 2647511 ~ 2658913 (+) True G111183
TU126324 other upstream 1931214 2445064 ~ 2449807 (+) True G111173
TU126322 other upstream 1935465 2445064 ~ 2445556 (+) False G111173
TU128448 other downstream 45345 4426658 ~ 4439762 (+) True G113050
TU128442 other downstream 378699 4785073 ~ 4793261 (+) True G113044
TU128430 other downstream 425714 4807027 ~ 4808872 (+) False CI01000020_04807118_04808453
TU128431 other downstream 425714 4823772 ~ 4823786 (+) True G113036
TU128432 other downstream 425714 4807027 ~ 4809414 (+) False CI01000020_04807118_04808453

Expression Profile