Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU129444 |
| length | 884 |
| lncRNA type | inter_gene |
| GC content | 0.46 |
| exon number | 6 |
| gene id | G113953 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 5503964 ~ 5506516 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU129445 | lncRNA | upstream | 9897 | 5493621 ~ 5493674 (+) | True | G113954 |
| TU129446 | lncRNA | upstream | 204399 | 5294981 ~ 5299565 (+) | True | G113955 |
| TU129466 | lncRNA | upstream | 303582 | 5179311 ~ 5200382 (+) | True | G113975 |
| TU129461 | lncRNA | upstream | 405601 | 5098142 ~ 5098363 (+) | True | G113970 |
| TU129453 | lncRNA | upstream | 447325 | 5056330 ~ 5056639 (+) | True | CI01000020_05038237_05069897 |
| TU129423 | lncRNA | downstream | 59876 | 5566392 ~ 5622606 (+) | True | G113932 |
| TU129432 | lncRNA | downstream | 108787 | 5615303 ~ 5618949 (+) | True | G113941 |
| TU129415 | lncRNA | downstream | 119407 | 5625923 ~ 5627623 (+) | True | G113924 |
| TU129552 | lncRNA | downstream | 162133 | 5668649 ~ 5668857 (+) | True | G114060 |
| TU129562 | lncRNA | downstream | 204127 | 5710643 ~ 5710910 (+) | True | G114070 |
| CI01000020_05490931_05500137.mRNA | mRNA | upstream | 3827 | 5490931 ~ 5500137 (+) | False | CI01000020_05490931_05500137 |
| CI01000020_05475873_05481460.mRNA | mRNA | upstream | 22504 | 5475873 ~ 5481460 (+) | True | CI01000020_05475873_05481460 |
| CI01000020_05341186_05473274.mRNA | mRNA | upstream | 30690 | 5341186 ~ 5473274 (+) | True | CI01000020_05341186_05473274 |
| CI01000020_05309535_05312719.mRNA | mRNA | upstream | 190580 | 5309535 ~ 5313384 (+) | True | CI01000020_05309535_05312719 |
| CI01000020_05269653_05286461.mRNA | mRNA | upstream | 216590 | 5269653 ~ 5287374 (+) | True | CI01000020_05269653_05286461 |
| CI01000020_05514885_05515490.mRNA | mRNA | downstream | 8369 | 5514885 ~ 5515695 (+) | True | CI01000020_05514885_05515490 |
| CI01000020_05536783_05538245.mRNA | mRNA | downstream | 30267 | 5536783 ~ 5538386 (+) | True | CI01000020_05536783_05538245 |
| CI01000020_05569133_05573180.mRNA | mRNA | downstream | 61867 | 5568383 ~ 5573807 (+) | True | CI01000020_05569133_05573180 |
| CI01000020_05636849_05648400.mRNA | mRNA | downstream | 128835 | 5635351 ~ 5648422 (+) | True | CI01000020_05636849_05648400 |
| CI01000020_05651021_05656758.mRNA | mRNA | downstream | 144263 | 5650779 ~ 5656904 (+) | True | CI01000020_05651021_05656758 |
| TU129409 | other | upstream | 235291 | 5267037 ~ 5267132 (+) | True | G113919 |
| TU128431 | other | upstream | 680178 | 4823772 ~ 4823786 (+) | True | G113036 |
| TU129420 | other | downstream | 116191 | 5622707 ~ 5625232 (+) | True | G113929 |
| TU129586 | other | downstream | 296536 | 5803052 ~ 5805718 (+) | True | G114094 |
| TU129648 | other | downstream | 473245 | 5979761 ~ 5981248 (+) | True | CI01000020_05960777_05981596 |
| TU129915 | other | downstream | 1085708 | 6592224 ~ 6593564 (+) | True | G114382 |
| TU129931 | other | downstream | 1091830 | 6598346 ~ 6600180 (+) | True | G114389 |
