RNA id: TU129586


Basic Information

Item Value
RNA id TU129586
length 399
RNA type TUCP
GC content 0.47
exon number 3
gene id G114094
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 5803052 ~ 5805718 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGCTCATCAAAATGTGTGTCTATGCCATTGAGACCGGGCACTGAGCAGGTCAGCTTGGCTTTCAAGAAGGTCGTCCATTTGTTCACGAGACTCCTGTGTCCACCCATGTCATTCTTACACAGTTGTCCTATCCTGGAGATAGTAGCTTTGCCTGTATGTTCACCGTCCATGGCATTCTCTTTGAAGAACAGGAAGATCTTGTCATCTTCAGGATTATCGCTTTCTGGGATTAAGTGTATTCCTAGAAACCTGGGGTCATTCAGCCATCTGGAATCATGCTGCTCAGTTCTGATTGGATGTTGTGACCCGAGTGTTCGGAAAATGGCAAAGTCTCGTCCCATGAAGTCTGCTGACGTTCCAGAGTACAGTTCTCCATCTGACAAACGGATAAGAGCAT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129577 lncRNA upstream 19309 5783516 ~ 5783743 (+) True G114085
TU129576 lncRNA upstream 19771 5783057 ~ 5783281 (+) True G114084
TU129404 lncRNA upstream 85910 5715663 ~ 5717142 (+) True G113915
TU129562 lncRNA upstream 92142 5710643 ~ 5710910 (+) True G114070
TU129552 lncRNA upstream 134195 5668649 ~ 5668857 (+) True G114060
TU129609 lncRNA downstream 41835 5847553 ~ 5847781 (+) True G114117
TU129619 lncRNA downstream 89909 5895627 ~ 5895917 (+) True G114127
TU129668 lncRNA downstream 128794 5934512 ~ 5975712 (+) True G114168
TU129653 lncRNA downstream 181673 5987391 ~ 5987951 (+) True G114153
TU129651 lncRNA downstream 207237 6012955 ~ 6013436 (+) True G114151
CI01000020_05651021_05656758.mRNA mRNA upstream 146148 5650779 ~ 5656904 (+) True CI01000020_05651021_05656758
CI01000020_05636849_05648400.mRNA mRNA upstream 154630 5635351 ~ 5648422 (+) True CI01000020_05636849_05648400
CI01000020_05569133_05573180.mRNA mRNA upstream 229245 5568383 ~ 5573807 (+) True CI01000020_05569133_05573180
CI01000020_05536783_05538245.mRNA mRNA upstream 264666 5536783 ~ 5538386 (+) True CI01000020_05536783_05538245
CI01000020_05514885_05515490.mRNA mRNA upstream 287357 5514885 ~ 5515695 (+) True CI01000020_05514885_05515490
CI01000020_05816151_05820574.mRNA mRNA downstream 9945 5815663 ~ 5820886 (+) True CI01000020_05816151_05820574
CI01000020_05941404_05941840.mRNA mRNA downstream 135686 5941404 ~ 5941885 (+) True CI01000020_05941404_05941840
CI01000020_05942995_05951650.mRNA mRNA downstream 136208 5941926 ~ 5952403 (+) True CI01000020_05942995_05951650
CI01000020_05960777_05981596.mRNA mRNA downstream 155059 5960777 ~ 5982298 (+) False CI01000020_05960777_05981596
CI01000020_05988468_05989551.mRNA mRNA downstream 182533 5988251 ~ 5989553 (+) True CI01000020_05988468_05989551
TU129420 other upstream 177820 5622707 ~ 5625232 (+) True G113929
TU129409 other upstream 534379 5267037 ~ 5267132 (+) True G113919
TU128431 other upstream 979266 4823772 ~ 4823786 (+) True G113036
TU129648 other downstream 174043 5979761 ~ 5981248 (+) True CI01000020_05960777_05981596
TU129915 other downstream 786506 6592224 ~ 6593564 (+) True G114382
TU129931 other downstream 792628 6598346 ~ 6600180 (+) True G114389
TU129929 other downstream 818549 6624267 ~ 6644816 (+) True G114388
TU129963 other downstream 956169 6761887 ~ 6762502 (+) True G114416

Expression Profile