RNA id: TU129720


Basic Information

Item Value
RNA id TU129720
length 226
lncRNA type inter_gene
GC content 0.56
exon number 1
gene id G114217
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 6097491 ~ 6097716 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTCAGAATATCCTCCAGAGGCCAAATCATACTCACACAGCGCGGCGGGGCTGTTGGCGGGGCTGTCCTCCAAGCCGTCAATCTCCACTAACACTCCCTCAGTGATCCACAGTGTTGCTGGCTCACGCAACTGGTCAGACTCTGTAAAGAGTTCAGGCTCCGGGGTAATGTCCTCTCCTGTCGTCTCCTCAGGTTCAGGCTCGTGCATTGCAGGAAGTCAGTCTCCA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129719 lncRNA upstream 612 6096644 ~ 6096879 (+) True G114216
TU129703 lncRNA upstream 27175 6070104 ~ 6070316 (+) True G114200
TU129651 lncRNA upstream 84055 6012955 ~ 6013436 (+) True G114151
TU129653 lncRNA upstream 109540 5987391 ~ 5987951 (+) True G114153
TU129668 lncRNA upstream 121779 5934512 ~ 5975712 (+) True G114168
TU129661 lncRNA downstream 36814 6134530 ~ 6135279 (+) True G114161
TU129733 lncRNA downstream 40935 6138651 ~ 6142560 (+) True G114230
TU129744 lncRNA downstream 66951 6164667 ~ 6166211 (+) True G114238
TU129748 lncRNA downstream 73543 6171259 ~ 6181364 (+) False G114242
TU129750 lncRNA downstream 74674 6172390 ~ 6181364 (+) False G114242
CI01000020_06035989_06042016.mRNA mRNA upstream 55471 6035989 ~ 6042020 (+) True CI01000020_06035989_06042016
CI01000020_06000788_06005009.mRNA mRNA upstream 92355 6000727 ~ 6005136 (+) True CI01000020_06000788_06005009
CI01000020_05988468_05989551.mRNA mRNA upstream 107938 5988251 ~ 5989553 (+) True CI01000020_05988468_05989551
CI01000020_05960777_05981596.mRNA mRNA upstream 115193 5960777 ~ 5982298 (+) False CI01000020_05960777_05981596
CI01000020_05942995_05951650.mRNA mRNA upstream 145088 5941926 ~ 5952403 (+) True CI01000020_05942995_05951650
CI01000020_06122192_06132967.mRNA mRNA downstream 24476 6122192 ~ 6133643 (+) True CI01000020_06122192_06132967
CI01000020_06272024_06286697.mRNA mRNA downstream 174308 6272024 ~ 6286956 (+) True CI01000020_06272024_06286697
CI01000020_06652576_06656275.mRNA mRNA downstream 554860 6652576 ~ 6656971 (+) True CI01000020_06652576_06656275
CI01000020_06769551_06772924.mRNA mRNA downstream 671594 6769310 ~ 6773163 (+) False CI01000020_06769551_06772924
CI01000020_06784747_06793255.mRNA mRNA downstream 686755 6784471 ~ 6794581 (+) True CI01000020_06784747_06793255
TU129648 other upstream 116243 5979761 ~ 5981248 (+) True CI01000020_05960777_05981596
TU129586 other upstream 291773 5803052 ~ 5805718 (+) True G114094
TU129420 other upstream 472259 5622707 ~ 5625232 (+) True G113929
TU129409 other upstream 828818 5267037 ~ 5267132 (+) True G113919
TU128434 other upstream 1288130 4807027 ~ 4809361 (+) True CI01000020_04807118_04808453
TU129915 other downstream 494508 6592224 ~ 6593564 (+) True G114382
TU129931 other downstream 500630 6598346 ~ 6600180 (+) True G114389
TU129929 other downstream 526551 6624267 ~ 6644816 (+) True G114388
TU129963 other downstream 664171 6761887 ~ 6762502 (+) True G114416
TU129957 other downstream 705832 6803548 ~ 6808718 (+) False G114413

Expression Profile