Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU129733 |
| length | 770 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 3 |
| gene id | G114230 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000020 |
| NCBI id | null |
| chromosome length | 7209782 |
| location | 6138651 ~ 6142560 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU129661 | lncRNA | upstream | 3372 | 6134530 ~ 6135279 (+) | True | G114161 |
| TU129720 | lncRNA | upstream | 40935 | 6097491 ~ 6097716 (+) | True | G114217 |
| TU129719 | lncRNA | upstream | 41772 | 6096644 ~ 6096879 (+) | True | G114216 |
| TU129703 | lncRNA | upstream | 68335 | 6070104 ~ 6070316 (+) | True | G114200 |
| TU129651 | lncRNA | upstream | 125215 | 6012955 ~ 6013436 (+) | True | G114151 |
| TU129744 | lncRNA | downstream | 22107 | 6164667 ~ 6166211 (+) | True | G114238 |
| TU129748 | lncRNA | downstream | 28699 | 6171259 ~ 6181364 (+) | False | G114242 |
| TU129750 | lncRNA | downstream | 29830 | 6172390 ~ 6181364 (+) | False | G114242 |
| TU129749 | lncRNA | downstream | 31188 | 6173748 ~ 6181364 (+) | True | G114242 |
| TU129764 | lncRNA | downstream | 67044 | 6209604 ~ 6211436 (+) | True | G114256 |
| CI01000020_06122192_06132967.mRNA | mRNA | upstream | 5008 | 6122192 ~ 6133643 (+) | True | CI01000020_06122192_06132967 |
| CI01000020_06035989_06042016.mRNA | mRNA | upstream | 96631 | 6035989 ~ 6042020 (+) | True | CI01000020_06035989_06042016 |
| CI01000020_06000788_06005009.mRNA | mRNA | upstream | 133515 | 6000727 ~ 6005136 (+) | True | CI01000020_06000788_06005009 |
| CI01000020_05988468_05989551.mRNA | mRNA | upstream | 149098 | 5988251 ~ 5989553 (+) | True | CI01000020_05988468_05989551 |
| CI01000020_05960777_05981596.mRNA | mRNA | upstream | 156353 | 5960777 ~ 5982298 (+) | False | CI01000020_05960777_05981596 |
| CI01000020_06272024_06286697.mRNA | mRNA | downstream | 129464 | 6272024 ~ 6286956 (+) | True | CI01000020_06272024_06286697 |
| CI01000020_06652576_06656275.mRNA | mRNA | downstream | 510016 | 6652576 ~ 6656971 (+) | True | CI01000020_06652576_06656275 |
| CI01000020_06769551_06772924.mRNA | mRNA | downstream | 626750 | 6769310 ~ 6773163 (+) | False | CI01000020_06769551_06772924 |
| CI01000020_06784747_06793255.mRNA | mRNA | downstream | 641911 | 6784471 ~ 6794581 (+) | True | CI01000020_06784747_06793255 |
| CI01000020_06795794_06800988.mRNA | mRNA | downstream | 653234 | 6795794 ~ 6801095 (+) | True | CI01000020_06795794_06800988 |
| TU129648 | other | upstream | 157403 | 5979761 ~ 5981248 (+) | True | CI01000020_05960777_05981596 |
| TU129586 | other | upstream | 332933 | 5803052 ~ 5805718 (+) | True | G114094 |
| TU129420 | other | upstream | 513419 | 5622707 ~ 5625232 (+) | True | G113929 |
| TU129409 | other | upstream | 869978 | 5267037 ~ 5267132 (+) | True | G113919 |
| TU128434 | other | upstream | 1329290 | 4807027 ~ 4809361 (+) | True | CI01000020_04807118_04808453 |
| TU129915 | other | downstream | 449664 | 6592224 ~ 6593564 (+) | True | G114382 |
| TU129931 | other | downstream | 455786 | 6598346 ~ 6600180 (+) | True | G114389 |
| TU129929 | other | downstream | 481707 | 6624267 ~ 6644816 (+) | True | G114388 |
| TU129963 | other | downstream | 619327 | 6761887 ~ 6762502 (+) | True | G114416 |
| TU129957 | other | downstream | 660988 | 6803548 ~ 6808718 (+) | False | G114413 |
