RNA id: TU129744


Basic Information

Item Value
RNA id TU129744
length 536
lncRNA type inter_gene
GC content 0.46
exon number 5
gene id G114238
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 6164667 ~ 6166211 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGGAAACCAGTCGTGGGGATGGGGAGGTACAAAGATCTCCAAGAGCAAATATCCCAGAAACTATGTGATTTTTTACAAGACTTGGAAGATTACTGCGGGTCATCCAGAAGTCTTTGTCATCTTTATTCAGTTTCCCTATGGCTTGAGCCAATGGCACGAAGAGAGTGAAATTTTCTGCCTTCGACAGTAGTTGAGAAAGATCCGCTCGAGCAATCCAGAGGTTAAATTCTTGAAGATCTGGGTTTGTTGACACCTCCTGTGCTAGTGTGCCATAACAAATTTCCCCGTCACCATCGTAGCCGTCCTCACACACACACTGCCATCCACCTGGGCTCAGAAACTTGCAGGTGCCCAGGAAATGGCATCCACCCTTCTGTTCCACACACTGATTGACAGGTTCACATTGCTTCCCGTTTCCATGGTAACCACTTTTGCAAGCACAATCGCTCTAGGGAGAATATCAATCATCAAAAATAATATGAATTCAGGTAGATGGGGTTTGAGAATCACAACGACCACTCTCACCTGTCCTGGG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129733 lncRNA upstream 22107 6138651 ~ 6142560 (+) True G114230
TU129661 lncRNA upstream 29388 6134530 ~ 6135279 (+) True G114161
TU129720 lncRNA upstream 66951 6097491 ~ 6097716 (+) True G114217
TU129719 lncRNA upstream 67788 6096644 ~ 6096879 (+) True G114216
TU129703 lncRNA upstream 94351 6070104 ~ 6070316 (+) True G114200
TU129748 lncRNA downstream 5048 6171259 ~ 6181364 (+) False G114242
TU129750 lncRNA downstream 6179 6172390 ~ 6181364 (+) False G114242
TU129749 lncRNA downstream 7537 6173748 ~ 6181364 (+) True G114242
TU129764 lncRNA downstream 43393 6209604 ~ 6211436 (+) True G114256
TU129785 lncRNA downstream 60663 6226874 ~ 6230133 (+) True G114274
CI01000020_06122192_06132967.mRNA mRNA upstream 31024 6122192 ~ 6133643 (+) True CI01000020_06122192_06132967
CI01000020_06035989_06042016.mRNA mRNA upstream 122647 6035989 ~ 6042020 (+) True CI01000020_06035989_06042016
CI01000020_06000788_06005009.mRNA mRNA upstream 159531 6000727 ~ 6005136 (+) True CI01000020_06000788_06005009
CI01000020_05988468_05989551.mRNA mRNA upstream 175114 5988251 ~ 5989553 (+) True CI01000020_05988468_05989551
CI01000020_05960777_05981596.mRNA mRNA upstream 182369 5960777 ~ 5982298 (+) False CI01000020_05960777_05981596
CI01000020_06272024_06286697.mRNA mRNA downstream 105813 6272024 ~ 6286956 (+) True CI01000020_06272024_06286697
CI01000020_06652576_06656275.mRNA mRNA downstream 486365 6652576 ~ 6656971 (+) True CI01000020_06652576_06656275
CI01000020_06769551_06772924.mRNA mRNA downstream 603099 6769310 ~ 6773163 (+) False CI01000020_06769551_06772924
CI01000020_06784747_06793255.mRNA mRNA downstream 618260 6784471 ~ 6794581 (+) True CI01000020_06784747_06793255
CI01000020_06795794_06800988.mRNA mRNA downstream 629583 6795794 ~ 6801095 (+) True CI01000020_06795794_06800988
TU129648 other upstream 183419 5979761 ~ 5981248 (+) True CI01000020_05960777_05981596
TU129586 other upstream 358949 5803052 ~ 5805718 (+) True G114094
TU129420 other upstream 539435 5622707 ~ 5625232 (+) True G113929
TU129409 other upstream 895994 5267037 ~ 5267132 (+) True G113919
TU128434 other upstream 1355306 4807027 ~ 4809361 (+) True CI01000020_04807118_04808453
TU129915 other downstream 426013 6592224 ~ 6593564 (+) True G114382
TU129931 other downstream 432135 6598346 ~ 6600180 (+) True G114389
TU129929 other downstream 458056 6624267 ~ 6644816 (+) True G114388
TU129963 other downstream 595676 6761887 ~ 6762502 (+) True G114416
TU129957 other downstream 637337 6803548 ~ 6808718 (+) False G114413

Expression Profile