RNA id: TU129750



Basic Information


Item Value
RNA id TU129750
length 1318
lncRNA type inter_gene
GC content 0.50
exon number 11
gene id G114242
representative False

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 6171259 ~ 6181364 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TGTTTGTGTTGTCTAACTCACAGATGTGCCCTTAAAAGCCTTGTTCACTGGCACGAACACAGTAAACGGTCCAAGGGAGGTCAGGGGCCACAACATGACTTTATTGAATAGTGTGATGGCACTGGAGAGCTGACCCTTCCACCCCCCTCCTGGTTTTGAATTCAAGTCTTGCAACTGCTGAATTATGTTCCCAAAGCATATTTTTCCATTTCCAAGGTAACCTTCAAGGCACTTGCATTGTTCCTGGTTCCACTGTGGCACAAGTGGCATATTTATGGCAGGAGTCTGGTTTGCACATATCTTTTATACTGCAGCCCTTCCCTTCCACAAACTTCTCAAATCCCTCCAAACACTCACAGTGAGCCTTTCCAGGGCTGTCATACACACAGCGCGTAGAGCCAGATGTGCAGTTGCCCAGGTTAGTCTGGCAGGGGTCGATGGGCATGCAGACACGGCCGTCACCACTGTAGCCTTCTGTACACGTGCAGACATGCTGGTTCGGCCCAGTATGCGCACACGTTGCGCTTGCATGGCATACGCCTCTCAAGCAGGGGTTAATTGATGTACATTGGACTCCATCACCTTGATAACCAGGTTTGCACCTGCAGTTAAGCTGCCCTGTAGACAGGTCCTCAATACAACGGGAATCTGGCCCACACCGCAGAGCAGCACATGCTGGGAGCTCTCGGTCGCACTCTATGCCAGTGTACCCAGACAGACATGTGCATTCTCCTGTGCCTTTCATGCCGCTGTCACATAAGCCATTCTTGCAGCTACACACATTATTGCACATGGGTCCATATAAATTCGCTTTACACTCCTCGCAAGCTGTTCCTCTAAACCCTGGTGCGCATGTGCAAGTCCCATTGCCCCCTATACCATCAGAGCAGACTCCATTATTGTTGCATGGGTTCGACGCTGATCCTGGACACTCAATGCAGTCATTGCCCCAGTAACCTGGACAGCACCGGGGTTCCACCGTGTCTTTGTAGCACTCATACGAACAGCCCGCAACAGACAAACCAGATGTGATTTCATACCTGCAGTCATTTGTGCTTTTCCCTGGTGGTTTCTTGGTGTAGCCACTGGGACAATTCACCAAAAACGTTATCGAGCAGGAATGACACTTCCCTTTAGTCACCACCTGGATGTTCTGATCACAACGGTTCTGCGGTGTTGCACCAGTCTCCCAGAGGATCTCAGTCCACAGCAGTAGGATCAAACCTCCACAGATTGAGTTTAAGATAAACTTCATGGCAATAATACTTTCTATTTCTCTCTCACTCTTTCTTTCTGGCTCTCTGAGGTCCTTCACCAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU129744 lncRNA upstream 6179 6164667 ~ 6166211 (+) True G114238
TU129733 lncRNA upstream 29830 6138651 ~ 6142560 (+) True G114230
TU129661 lncRNA upstream 37111 6134530 ~ 6135279 (+) True G114161
TU129720 lncRNA upstream 74674 6097491 ~ 6097716 (+) True G114217
TU129719 lncRNA upstream 75511 6096644 ~ 6096879 (+) True G114216
TU129764 lncRNA downstream 28240 6209604 ~ 6211436 (+) True G114256
TU129785 lncRNA downstream 45510 6226874 ~ 6230133 (+) True G114274
TU129802 lncRNA downstream 69703 6251067 ~ 6251391 (+) True G114284
TU129873 lncRNA downstream 233644 6415008 ~ 6416595 (+) True G114355
TU129880 lncRNA downstream 239288 6420652 ~ 6421018 (+) True G114356
CI01000020_06122192_06132967.mRNA mRNA upstream 38747 6122192 ~ 6133643 (+) True CI01000020_06122192_06132967
CI01000020_06035989_06042016.mRNA mRNA upstream 130370 6035989 ~ 6042020 (+) True CI01000020_06035989_06042016
CI01000020_06000788_06005009.mRNA mRNA upstream 167254 6000727 ~ 6005136 (+) True CI01000020_06000788_06005009
CI01000020_05988468_05989551.mRNA mRNA upstream 182837 5988251 ~ 5989553 (+) True CI01000020_05988468_05989551
CI01000020_05960777_05981596.mRNA mRNA upstream 190092 5960777 ~ 5982298 (+) False CI01000020_05960777_05981596
CI01000020_06272024_06286697.mRNA mRNA downstream 90660 6272024 ~ 6286956 (+) True CI01000020_06272024_06286697
CI01000020_06652576_06656275.mRNA mRNA downstream 471212 6652576 ~ 6656971 (+) True CI01000020_06652576_06656275
CI01000020_06769551_06772924.mRNA mRNA downstream 587946 6769310 ~ 6773163 (+) False CI01000020_06769551_06772924
CI01000020_06784747_06793255.mRNA mRNA downstream 603107 6784471 ~ 6794581 (+) True CI01000020_06784747_06793255
CI01000020_06795794_06800988.mRNA mRNA downstream 614430 6795794 ~ 6801095 (+) True CI01000020_06795794_06800988
TU129648 other upstream 191142 5979761 ~ 5981248 (+) True CI01000020_05960777_05981596
TU129586 other upstream 366672 5803052 ~ 5805718 (+) True G114094
TU129420 other upstream 547158 5622707 ~ 5625232 (+) True G113929
TU129409 other upstream 903717 5267037 ~ 5267132 (+) True G113919
TU128434 other upstream 1363029 4807027 ~ 4809361 (+) True CI01000020_04807118_04808453
TU129915 other downstream 410860 6592224 ~ 6593564 (+) True G114382
TU129931 other downstream 416982 6598346 ~ 6600180 (+) True G114389
TU129929 other downstream 442903 6624267 ~ 6644816 (+) True G114388
TU129963 other downstream 580523 6761887 ~ 6762502 (+) True G114416
TU129957 other downstream 622184 6803548 ~ 6808718 (+) False G114413

Expression Profile