RNA id: TU129764



Basic Information


Item Value
RNA id TU129764
length 1297
lncRNA type intronic
GC content 0.41
exon number 2
gene id G114256
representative True

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 6209604 ~ 6211436 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


GCAGGTTCTGTGAAACTCTTTGGTGATATTTCATACTTCGAGAGTCCTAACTCTTTGAATTAAAATTTGTGTGCACCATTCATCTTACAGACACTAATTATACTTCAGATTTAGGGTTAGTGGTTTTATTATTCTATACAATTTTGCCATGTGTGCATGTTTTTTCAGTGTGTGAACATTTAAAGGGTTAATTCTTAATTCTGTCATTAAAGGATTTATTCATTTTAAAATGAAAATTACACCAAGCTTTACTCACCTTCATGTCGTTCGAAACCCATAAGACCTTCGTTCTTCTTCGGACCACAAATTAAGATATTTTCGATGAAATCCGAAAGCTATTTACAGCAATTTAATTATCACTTTTCAGGCCCAGAAAGGTACTAAAGACATTAAAATGGTCCATGTGACTGCAGTGGTTCAACCTTGTGGTGCGTTCACACCAGACGCGAATGAAGCGTTAAGCGTGAGTGATTTACATGTTAAGTCAATGCAAAGATGCAAATAGATATCCTGCGGCGCGATTCGCGCGAATGAGGCGGTGCGAATGACGCGGCGCGAATTGAGCATTTCGGGCATTTGACGCGCGTAACGCATGATTTGCGCAAATCGTGCGAGTTGAAAAATCTGAACTTTGGCGAAAATTCGCACCGCGTCAGGAGCTTGCTCTAGAAGTGACGTGATTACGACATAGCAAGAGGAGGCAGAAATCCGAAGCAACAATGGAGGACAAAATCATCGTCGCTGTACGATACATCTTCATACTTTTATAGAAACAGGAATAAAAAGGATCTTGCTTGGAAGAAAGTGAATGAGGAAGTCGGACAATCTGGTAAGTTGTAAAAAATGCTCTTTACTCAATTTGAGCTATATATATACAAATATTGAGACTACAAGCTAGCTAAAGCCAGCAAATTGAGCTTATTCGCCGTATTTTACAACTACTTTCCCGCTGACGAGTTGATGTGTTTATTCAGAGGAAGTGTGCAGAAACGAGACTGGAGCCGCCTGGCAGAAGCCCCTCTTATGACACGAATTCGCGTCTGCTGTGAAGTGAATTTCACGCGCGAATGAAGCGAGTAAACTCAAAATGTTCAAGCGTCCAACTACGCGCGAATAGTCGCGTCGGGTGTGAATGCCCCATTAATGTTATGTAATGTTATATTATTTTTTTCTGGCTCAGTATTGGCCGGCTCCTGAGTCAGCATCACACCATCACACCAATACTACATTCATGGACTATTTTAACAATGTCTTTTCTACCTTTTTTGGCCTGGAAAGAGGTAATTAAATTGCTGTC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU129748 lncRNA upstream 28240 6171259 ~ 6181364 (+) False G114242
TU129750 lncRNA upstream 28240 6172390 ~ 6181364 (+) False G114242
TU129749 lncRNA upstream 28240 6173748 ~ 6181364 (+) True G114242
TU129744 lncRNA upstream 43393 6164667 ~ 6166211 (+) True G114238
TU129733 lncRNA upstream 67044 6138651 ~ 6142560 (+) True G114230
TU129785 lncRNA downstream 15438 6226874 ~ 6230133 (+) True G114274
TU129802 lncRNA downstream 39631 6251067 ~ 6251391 (+) True G114284
TU129873 lncRNA downstream 203572 6415008 ~ 6416595 (+) True G114355
TU129880 lncRNA downstream 209216 6420652 ~ 6421018 (+) True G114356
TU129887 lncRNA downstream 210277 6421713 ~ 6422152 (+) True G114357
CI01000020_06122192_06132967.mRNA mRNA upstream 75961 6122192 ~ 6133643 (+) True CI01000020_06122192_06132967
CI01000020_06035989_06042016.mRNA mRNA upstream 167584 6035989 ~ 6042020 (+) True CI01000020_06035989_06042016
CI01000020_06000788_06005009.mRNA mRNA upstream 204468 6000727 ~ 6005136 (+) True CI01000020_06000788_06005009
CI01000020_05988468_05989551.mRNA mRNA upstream 220051 5988251 ~ 5989553 (+) True CI01000020_05988468_05989551
CI01000020_05960777_05981596.mRNA mRNA upstream 227306 5960777 ~ 5982298 (+) False CI01000020_05960777_05981596
CI01000020_06272024_06286697.mRNA mRNA downstream 60588 6272024 ~ 6286956 (+) True CI01000020_06272024_06286697
CI01000020_06652576_06656275.mRNA mRNA downstream 441140 6652576 ~ 6656971 (+) True CI01000020_06652576_06656275
CI01000020_06769551_06772924.mRNA mRNA downstream 557874 6769310 ~ 6773163 (+) False CI01000020_06769551_06772924
CI01000020_06784747_06793255.mRNA mRNA downstream 573035 6784471 ~ 6794581 (+) True CI01000020_06784747_06793255
CI01000020_06795794_06800988.mRNA mRNA downstream 584358 6795794 ~ 6801095 (+) True CI01000020_06795794_06800988
TU129648 other upstream 228356 5979761 ~ 5981248 (+) True CI01000020_05960777_05981596
TU129586 other upstream 403886 5803052 ~ 5805718 (+) True G114094
TU129420 other upstream 584372 5622707 ~ 5625232 (+) True G113929
TU129409 other upstream 940931 5267037 ~ 5267132 (+) True G113919
TU128434 other upstream 1400243 4807027 ~ 4809361 (+) True CI01000020_04807118_04808453
TU129915 other downstream 380788 6592224 ~ 6593564 (+) True G114382
TU129931 other downstream 386910 6598346 ~ 6600180 (+) True G114389
TU129929 other downstream 412831 6624267 ~ 6644816 (+) True G114388
TU129963 other downstream 550451 6761887 ~ 6762502 (+) True G114416
TU129957 other downstream 592112 6803548 ~ 6808718 (+) False G114413

Expression Profile