RNA id: TU129802


Basic Information

Item Value
RNA id TU129802
length 272
lncRNA type intronic
GC content 0.43
exon number 2
gene id G114284
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 6251067 ~ 6251391 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CTCATTGGTTCTTGCAGAAGCTCAAACGTGCTGCGTAACACACGTGAACAAACCTCATTGGTTCTTGCGGAAGCTCAAACGTGATGCGTAACACAAGAATGGACCTTATTGGTTCTTGCGGAAGCTCAAACGTGATGCGTAACACACGAGAACGAACCTCATTGGTTCTCACACGTCAGGTAAACATGCTTGAGCTTCCGTTTACCACAACTGATGTTCATCATATAAAGTGATTGTGTCTCTTCAGAAAACTTGGACTAAGTAGTTCAATT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU129785 lncRNA upstream 20934 6226874 ~ 6230133 (+) True G114274
TU129764 lncRNA upstream 39631 6209604 ~ 6211436 (+) True G114256
TU129748 lncRNA upstream 69703 6171259 ~ 6181364 (+) False G114242
TU129750 lncRNA upstream 69703 6172390 ~ 6181364 (+) False G114242
TU129749 lncRNA upstream 69703 6173748 ~ 6181364 (+) True G114242
TU129873 lncRNA downstream 163617 6415008 ~ 6416595 (+) True G114355
TU129880 lncRNA downstream 169261 6420652 ~ 6421018 (+) True G114356
TU129887 lncRNA downstream 170322 6421713 ~ 6422152 (+) True G114357
TU129906 lncRNA downstream 259828 6511219 ~ 6511539 (+) True G114376
TU129935 lncRNA downstream 290033 6541424 ~ 6541667 (+) True G114393
CI01000020_06122192_06132967.mRNA mRNA upstream 117424 6122192 ~ 6133643 (+) True CI01000020_06122192_06132967
CI01000020_06035989_06042016.mRNA mRNA upstream 209047 6035989 ~ 6042020 (+) True CI01000020_06035989_06042016
CI01000020_06000788_06005009.mRNA mRNA upstream 245931 6000727 ~ 6005136 (+) True CI01000020_06000788_06005009
CI01000020_05988468_05989551.mRNA mRNA upstream 261514 5988251 ~ 5989553 (+) True CI01000020_05988468_05989551
CI01000020_05960777_05981596.mRNA mRNA upstream 268769 5960777 ~ 5982298 (+) False CI01000020_05960777_05981596
CI01000020_06272024_06286697.mRNA mRNA downstream 20633 6272024 ~ 6286956 (+) True CI01000020_06272024_06286697
CI01000020_06652576_06656275.mRNA mRNA downstream 401185 6652576 ~ 6656971 (+) True CI01000020_06652576_06656275
CI01000020_06769551_06772924.mRNA mRNA downstream 517919 6769310 ~ 6773163 (+) False CI01000020_06769551_06772924
CI01000020_06784747_06793255.mRNA mRNA downstream 533080 6784471 ~ 6794581 (+) True CI01000020_06784747_06793255
CI01000020_06795794_06800988.mRNA mRNA downstream 544403 6795794 ~ 6801095 (+) True CI01000020_06795794_06800988
TU129648 other upstream 269819 5979761 ~ 5981248 (+) True CI01000020_05960777_05981596
TU129586 other upstream 445349 5803052 ~ 5805718 (+) True G114094
TU129420 other upstream 625835 5622707 ~ 5625232 (+) True G113929
TU129409 other upstream 982394 5267037 ~ 5267132 (+) True G113919
TU128434 other upstream 1441706 4807027 ~ 4809361 (+) True CI01000020_04807118_04808453
TU129915 other downstream 340833 6592224 ~ 6593564 (+) True G114382
TU129931 other downstream 346955 6598346 ~ 6600180 (+) True G114389
TU129929 other downstream 372876 6624267 ~ 6644816 (+) True G114388
TU129963 other downstream 510496 6761887 ~ 6762502 (+) True G114416
TU129957 other downstream 552157 6803548 ~ 6808718 (+) False G114413

Expression Profile