RNA id: TU129928



Basic Information


Item Value
RNA id TU129928
length 1183
lncRNA type antisense_over
GC content 0.51
exon number 7
gene id G114388
representative False

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 6617328 ~ 6644816 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


TTGTTGTTTTCTTGGTGCATTAACAGCTTTGGTGTTAAATAATAATGTGACTGTAAAAGAACTCTGCAGGACATCTAGCTAATAAGATAACATGGAATTAAGTCAGGAAGTGAGGACATGGGTCTCACCCTCTGAGATGTGAACAGTGAAAGGACTTCTGGGTATTTGTTGGCCAGCGAATGTTACATATATAGTGTGAGGGCCCTCCAGAATAGGGCCGTAGGTGCAGCGGAAAACACTATCCCCCTTGTTTTCCAGAATGATCTCCACTGTGTCTCTCCGACCCTGAGAGTCCACAATGATCACGCCAACATCGCCTGCTCCGGCACCTGCTGTGTAGATGTCAAAATACGTGGGTTTATTGGCCACATTGCCCACCGCTTCCAAACCTGGCCCACGGGCCTGCACCTTGTTCGGATCTCCCAATGCTTTAGACACATTTACCAGGAAAGGGCTCCTGTCAATGTCCTGTCCAGCAAACAACACCTTCACCTTATGCAGACCCTCCACTTTTGGAACATAGACCACAGAGTAGCTCCTGTTCCTGTCATTGTTGGGAATTACTCTAGCCTCTTCTGTGTGGCCCTCTGGATCCTCAATGTACACCAACACCTCTCCAAGTCCCGCTTCCACAGTCTCCACGACAAATTCAGCTGGTCTCAACACAACGTTGCCTCTGGGCTCAATACCTGGCCCATAGGCCTTGGCTCTCTTGGGGTGCAAAGTTTTAGATCGCAGTGGGGCACCAGGTTTGAGTTTGGCTTTGGGGAACTGAGACAGGTAGGTCATCACTGAGTGCTCGTCCACATTGGGATCCACAATCTCCTCTGGAGCAATCACCTGAGGCACACCGAGCCAATCGTCGGCTTGCTGCATGGCTTCTCTCGCATTCTCCACTGGCTGACTCGGGTCCCATGTCTCCCAGTCCGGACACAGGCCAGGGGCGCAATTATCCACCAGGGCACCGAGGGCTTTGCCATCTCTCCAGTCCCTGTGGAAGTTGTTGATGGGCAACTGGGGGACCTTGTTCTGGATCCAGCCCAGAAGGCGCTGTTTTGGTGTCAGCTTCCTGGCATCTTCATCGTCCTCATCCTCCCACATGGGCATGGAAATGGAGTAGTGCAGGATAAGGGTCCATATCAGCCCCAGGATCAGTTTTAGGTTGCCATCCACTATAGCTTTA

Function


GO: NA

KEGG: NA

JBrowse2


Loading

Neighbor


RNA id RNA type direction distance location representative gene id
TU129935 lncRNA upstream 75661 6541424 ~ 6541667 (+) True G114393
TU129906 lncRNA upstream 105789 6511219 ~ 6511539 (+) True G114376
TU129887 lncRNA upstream 195176 6421713 ~ 6422152 (+) True G114357
TU129880 lncRNA upstream 196310 6420652 ~ 6421018 (+) True G114356
TU129873 lncRNA upstream 200733 6415008 ~ 6416595 (+) True G114355
TU130014 lncRNA downstream 22619 6647124 ~ 6647576 (+) True G114464
TU129990 lncRNA downstream 23722 6648227 ~ 6649564 (+) True G114440
TU130028 lncRNA downstream 55968 6680473 ~ 6681021 (+) True G114478
TU130041 lncRNA downstream 131367 6755872 ~ 6756133 (+) True G114491
TU130044 lncRNA downstream 135096 6759601 ~ 6759834 (+) True G114494
CI01000020_06272024_06286697.mRNA mRNA upstream 330372 6272024 ~ 6286956 (+) True CI01000020_06272024_06286697
CI01000020_06122192_06132967.mRNA mRNA upstream 483685 6122192 ~ 6133643 (+) True CI01000020_06122192_06132967
CI01000020_06035989_06042016.mRNA mRNA upstream 575308 6035989 ~ 6042020 (+) True CI01000020_06035989_06042016
CI01000020_06000788_06005009.mRNA mRNA upstream 612192 6000727 ~ 6005136 (+) True CI01000020_06000788_06005009
CI01000020_05988468_05989551.mRNA mRNA upstream 627775 5988251 ~ 5989553 (+) True CI01000020_05988468_05989551
CI01000020_06652576_06656275.mRNA mRNA downstream 28071 6652576 ~ 6656971 (+) True CI01000020_06652576_06656275
CI01000020_06769551_06772924.mRNA mRNA downstream 144805 6769310 ~ 6773163 (+) False CI01000020_06769551_06772924
CI01000020_06784747_06793255.mRNA mRNA downstream 159966 6784471 ~ 6794581 (+) True CI01000020_06784747_06793255
CI01000020_06795794_06800988.mRNA mRNA downstream 171289 6795794 ~ 6801095 (+) True CI01000020_06795794_06800988
CI01000020_06809322_06816591.mRNA mRNA downstream 184817 6809322 ~ 6816591 (+) True CI01000020_06809322_06816591
TU129931 other upstream 17148 6598346 ~ 6600180 (+) True G114389
TU129915 other upstream 23764 6592224 ~ 6593564 (+) True G114382
TU129648 other upstream 636080 5979761 ~ 5981248 (+) True CI01000020_05960777_05981596
TU129586 other upstream 811610 5803052 ~ 5805718 (+) True G114094
TU129420 other upstream 992096 5622707 ~ 5625232 (+) True G113929
TU129963 other downstream 137382 6761887 ~ 6762502 (+) True G114416
TU129957 other downstream 179043 6803548 ~ 6808718 (+) False G114413
TU129959 other downstream 179043 6803548 ~ 6808454 (+) False G114413
TU129960 other downstream 179043 6803548 ~ 6808718 (+) True G114413

Expression Profile


TU129928 Expression in PRJCA010000

Bar chart with 27 bars.
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying values. Range: 0 to 8.
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TU129928 Expression in each Bioproject

Bar chart with 38 bars.
TU129928 Expression in each Sample
The chart has 1 X axis displaying categories.
The chart has 1 Y axis displaying Expression. Range: 0 to 600.
End of interactive chart.