RNA id: TU130049


Basic Information

Item Value
RNA id TU130049
length 203
lncRNA type inter_gene
GC content 0.39
exon number 1
gene id G114499
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 6778779 ~ 6778981 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATCGCTGTGACCGCTCCATCTTTCAGTTTCAAACGAACTGTAAATCCAGCGTCGAACTGGGCCTTGTTTATAAAACCATAAGCACCGATCCCGAGGGCTCGAGCAGCCATGGAAAAACACGAGATATTCACCATTCATTTTAACCAGTAAAAAAGTGATTTCAACTATCAGTTTCTATGATTATTTTAATAAAAAATATCGAG

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130044 lncRNA upstream 18945 6759601 ~ 6759834 (+) True G114494
TU130041 lncRNA upstream 22646 6755872 ~ 6756133 (+) True G114491
TU130028 lncRNA upstream 97758 6680473 ~ 6681021 (+) True G114478
TU129990 lncRNA upstream 129215 6648227 ~ 6649564 (+) True G114440
TU130014 lncRNA upstream 131203 6647124 ~ 6647576 (+) True G114464
TU130050 lncRNA downstream 18 6778999 ~ 6779514 (+) True G114500
TU130051 lncRNA downstream 737 6779718 ~ 6779923 (+) True G114501
TU130055 lncRNA downstream 31666 6810647 ~ 6810919 (+) True G114505
TU129986 lncRNA downstream 134473 6913454 ~ 6914288 (+) True G114436
TU129976 lncRNA downstream 159932 6938913 ~ 6940153 (+) True G114427
CI01000020_06769551_06772924.mRNA mRNA upstream 5616 6769310 ~ 6773163 (+) False CI01000020_06769551_06772924
CI01000020_06652576_06656275.mRNA mRNA upstream 121808 6652576 ~ 6656971 (+) True CI01000020_06652576_06656275
CI01000020_06272024_06286697.mRNA mRNA upstream 491823 6272024 ~ 6286956 (+) True CI01000020_06272024_06286697
CI01000020_06122192_06132967.mRNA mRNA upstream 645136 6122192 ~ 6133643 (+) True CI01000020_06122192_06132967
CI01000020_06035989_06042016.mRNA mRNA upstream 736759 6035989 ~ 6042020 (+) True CI01000020_06035989_06042016
CI01000020_06784747_06793255.mRNA mRNA downstream 5490 6784471 ~ 6794581 (+) True CI01000020_06784747_06793255
CI01000020_06795794_06800988.mRNA mRNA downstream 16813 6795794 ~ 6801095 (+) True CI01000020_06795794_06800988
CI01000020_06809322_06816591.mRNA mRNA downstream 30341 6809322 ~ 6816591 (+) True CI01000020_06809322_06816591
CI01000020_06819838_06824266.mRNA mRNA downstream 40857 6819838 ~ 6824669 (+) True CI01000020_06819838_06824266
CI01000020_06833378_06846518.mRNA mRNA downstream 54361 6833342 ~ 6846776 (+) True CI01000020_06833378_06846518
TU129963 other upstream 4705 6761887 ~ 6762502 (+) True G114416
TU129929 other upstream 133963 6624267 ~ 6644816 (+) True G114388
TU129931 other upstream 178599 6598346 ~ 6600180 (+) True G114389
TU129915 other upstream 185215 6592224 ~ 6593564 (+) True G114382
TU129648 other upstream 797531 5979761 ~ 5981248 (+) True CI01000020_05960777_05981596
TU129957 other downstream 24567 6803548 ~ 6808718 (+) False G114413
TU129959 other downstream 24567 6803548 ~ 6808454 (+) False G114413
TU129960 other downstream 24567 6803548 ~ 6808718 (+) True G114413

Expression Profile