RNA id: TU129959



Basic Information


Item Value
RNA id TU129959
length 3130
RNA type TUCP
GC content 0.42
exon number 11
gene id G114413
representative False

Chromosome Information


Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 6803548 ~ 6808718 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGGAAATAATCATACGTTGTCCTTCAGGGCCTTGTCCTTCATCCAGGTGGTGAGGGGTTCGAACTCTTTCTCCAAAGCTTCCCTCTTCTCCTTGGCCTTATCGTTCTCGTCAAACTTCACACCCTCCTTCGCCACGTTCTGGAAGCGTTTGCCGTCAAACTCGGGCAGGGCCTGGATGCAGTACTCATCCACTGGCTCTGTCAGGTAGACGACCTCATATCCTTTCTTAAGAAGCCTCTCCACGAATGGGGAAGACTCGGCCTCCTTCCTGGTGGTTCCAGCCATGAAGTAGATCTTGTCTTGCTTCTCCTTCATCCTCTCCACATACTGCTCCAGACTAGACAGCACAGTCTCGCTGTGGGAGGTCTGGAAGCGGAGCAGCTTGGCCAGGCGAGTTCTGTTGGAGTGATCCTCAATAACTCCCAGCTTGATGTTGGTGCCGAACTCCTTCCAGAACTTGTCATTGTACTGCTCCTCTGCGATTTTCTTGATCATGTCCAGGGTCTTACGGACCAGCTTCTTACGAATGACCTTGAGCAGTTTGTGTTGCTGTAGAGTTTCTCTGGACACATTCAGAGGTAGATCATCAGAGTCCACAACGCCTTTGATGAAGTTGAGGTACTTGGGCATCATGTCATGGAAGTCATCGGTGATGAAGACTCTACGCACAAATAGCTTGATGAAGTCATTCTTCTTGGTCCCATACTCGTCGAAAAGACCTCTGGGTGCAGCTGCAGGGATGAAGAGGATGGACTTGAAGGTGACCTCGCCTTCAGCAGTGAAGTGAATGTGTGACATGGGCTCCTCCGTGTCCCTGGAGAAGGTCTTGTAGAAGGCTTTGTATTCATCCTCCTCCACTTCCTTTGCAGGCCTCTGCCAGATGGGTTTAATGTCATTCATCAGCTCCCAGTCCCACACGGTCTTCTCCACCTTCTTAGTCTTTGGTTTGTCCTTGTCTTCATCCTCTTCCTCAACCTCAGCCTCATCTTCAGTGGTCTCTTCCTTCTCTGGCTCAGCCTCCTCCTCTTCAATGGGCTCCTCTACGGTCTCGGTCTTGCTGCTCCATACATAGATGGGGAAGTTGATGAACTGAGAGTACTTCTTCACCAGGTTCTTAATGGTCTCCAGCTCAAGGTAGTCAGAAGCTTCCTCTTTCATCACCAACGTAATGGTGGTGCCTCTGCCCAGAGTGTCACCACGAGGGTCCTCAATGACGGAGAACTCATTGGAATCAGATTCCCAAATGTGTTGGGTGCCGTTGTTGTGTTTGGAGGTGACGATGACCTTATCAGCCACAAGGAAAGCAGAGTAGAAGCCCACACCAAACTGACCGATCAGCTCAGAGGTGGTCTGACTGTCATCCTGGATCTCAGTCATCTTGTTGAGGAACTCGCTGGTTCCGGACTTGGCGATGGTACCAAGGTTCTTCACCAGTTCTTCTTTGGTCATGCCGATACCAGTGTCAGTGATGTGAAGCATGTTCTTTTCTTTGTCGGACTGGTGAGAGAAAACAAAAGACACAGGACTAAATATTGAATAACCTTGATAAAAATCAAGTAAAAAATATTGACTAGTTGGTTAGAGTTTTAACGCCATGCCAACTTCATTGGCTATTTTCATGGCGACTAACAAGCAATTTAAATTTGCTTTAGATTAAAACTCTAAAATAGATACAGGGTTGACTGTTAAACAGTTCTTCTAAAGTGTTTGCAGTGTAATAAAATTCCCTGAAAACTTAAACCATAATTTAATCAAATATATTTAAGAGATACTAGACTTCACTAAATGAACAAATAAATAAAAATGTAATCATTTGCATAATTAAACAAGGTGCTGAGCATCAAAATTAAGATATGAAAATTAGAGGAAAGAAATGCTCCTCAAATTGCTGCACACACTTTTGAATTCCTTTTGCAATGCAAATGTATAAGTGATGCTATTTCTCTCTCTCCACTGGAAATTTCCAGTACTGTAGGTTCGGTAGACGGGGTTGATCAGAAATGGTGAGTCTTAGGGCTCATTTTTAACACACCTTGATTTTAATTGTAAGCTCTTCATTTCCAGCAAGGGCATCATCGTTGGTCAGGGACAACAACCGGATCTTATCCAAGGCATCGGAAGCATTAGAGATCAGTTCTCTAAGGAAGATCTCCTTGTTCTTATACAGAGAATTGATGATCAGTTTCATCATCCTGTTCACTTCCGCCTGGAATACATGCTTTTCTGCTTTTTCGCGAATTTCCTTAATTTGTGAGGCGTTCAAACCATCTAGCTGAATGGCTTCTTCCTCCCTCTGAACAACCTCGTCATCTGTGCGGGATCCGTCTCTGCTCTTCCCAAGGTCCTCTTCCACTGTGCCGTCAACGTCAACGTCATCATCAGCTTTCACAGATGCTGCAATTATGCAAAACAAAGATAGCAAAAAAAACCACAAATAATGTGAATGTGATGTTGGTGATAAAGCACTTTAAAGCCATATGGTGTTAATAACAATGATATAACAGCACACAGCACCAAAATACCACTCTTATTTGGATCACAAGTTTTCTAACTTAATTCCTAAGTATATTTGCTCAGCAAAAACTCTTTTGTGCCCAGCAAGGATGTTCATTTTACATGAATGAATATCTGTGATGTGAAATTTAATTAAAAATGCCAAGGTAAGGCTCTGAAATGTGCAAAATGCTTTTGATTTGTGTGCAAATGCACGTTTTTAATTCAGAAGATCTCAGTTAGGCAGTTTAAGGCCTTGATGTGACAGTTCACATGGTTCAAGATAGCTGAATCAATTCCTTTAAATGTGAAATTAGACTACACTGTTCAATTTGTCTTATATGACTATATTATTAGGTATTTTCATTGTACATTACTAGCCCAACTATTTCAATGCAATTTGTCATTTTAAAGCACCATATAACTGTATCATTATTAAACGGCATCTAAATATTATATGAAGGCCATTTCAATCTAAGGAAACTTCCAGAAGCACATGCAAGTCAAATCCACTCTCCAGGTTTTATTTCCTGTTCTGAATCATTCATCTATTTAGGAAGCGTTAACATTATCTACAAATAAAGTATTATCAAAAAACTGAATATATAATACTAATGCTTATATGGCAGAAAGAGGA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU130051 lncRNA upstream 23625 6779718 ~ 6779923 (+) True G114501
TU130050 lncRNA upstream 24034 6778999 ~ 6779514 (+) True G114500
TU130049 lncRNA upstream 24567 6778779 ~ 6778981 (+) True G114499
TU130044 lncRNA upstream 43714 6759601 ~ 6759834 (+) True G114494
TU130041 lncRNA upstream 47415 6755872 ~ 6756133 (+) True G114491
TU130055 lncRNA downstream 2193 6810647 ~ 6810919 (+) True G114505
TU129986 lncRNA downstream 105000 6913454 ~ 6914288 (+) True G114436
TU129976 lncRNA downstream 130459 6938913 ~ 6940153 (+) True G114427
TU130092 lncRNA downstream 268725 7077179 ~ 7079432 (+) True G114532
TU130100 lncRNA downstream 271134 7079588 ~ 7080932 (+) True G114540
CI01000020_06795794_06800988.mRNA mRNA upstream 2453 6795794 ~ 6801095 (+) True CI01000020_06795794_06800988
CI01000020_06784747_06793255.mRNA mRNA upstream 8967 6784471 ~ 6794581 (+) True CI01000020_06784747_06793255
CI01000020_06769551_06772924.mRNA mRNA upstream 30385 6769310 ~ 6773163 (+) False CI01000020_06769551_06772924
CI01000020_06652576_06656275.mRNA mRNA upstream 146577 6652576 ~ 6656971 (+) True CI01000020_06652576_06656275
CI01000020_06272024_06286697.mRNA mRNA upstream 516592 6272024 ~ 6286956 (+) True CI01000020_06272024_06286697
CI01000020_06809322_06816591.mRNA mRNA downstream 868 6809322 ~ 6816591 (+) True CI01000020_06809322_06816591
CI01000020_06819838_06824266.mRNA mRNA downstream 11384 6819838 ~ 6824669 (+) True CI01000020_06819838_06824266
CI01000020_06833378_06846518.mRNA mRNA downstream 24888 6833342 ~ 6846776 (+) True CI01000020_06833378_06846518
CI01000020_06852155_06857778.mRNA mRNA downstream 43701 6852155 ~ 6857785 (+) True CI01000020_06852155_06857778
CI01000020_06860988_06887829.mRNA mRNA downstream 52534 6860988 ~ 6888034 (+) True CI01000020_06860988_06887829
TU129963 other upstream 29474 6761887 ~ 6762502 (+) True G114416
TU129929 other upstream 158732 6624267 ~ 6644816 (+) True G114388
TU129931 other upstream 203368 6598346 ~ 6600180 (+) True G114389
TU129915 other upstream 209984 6592224 ~ 6593564 (+) True G114382
TU129648 other upstream 822300 5979761 ~ 5981248 (+) True CI01000020_05960777_05981596

Expression Profile