RNA id: TU130100


Basic Information

Item Value
RNA id TU130100
length 1345
lncRNA type inter_gene
GC content 0.36
exon number 1
gene id G114540
representative True

Chromosome Information

Item Value
chromosome id CI01000020
NCBI id null
chromosome length 7209782
location 7079588 ~ 7080932 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ACACTCTTAAAAGTAAAGTTTCTTTATTGGCGTCAATGGTTCCATGAAGAACCCTTAACATTCATAGAACATTTCCATTGCACAAAACGTTCTTTATATTGGAAAAAAGATCTTTAGATTGTTTAAATGTTCCTCACACAAAGAAGAAAATGATTCTTTGAAGAACTGTTCACTGATTTGGTTCTTTGGGGAACCAAAAATCTTTTGGATCCTTTATATTTAAGAGTAGTGTTCCTCTGGCTGATACAAAATGCATGAACTGATAAAATATATAACTTATATGCAGTTCATATCAAATATAAATATATAAAATATATAACGTACTGGCCACTTTATTAGGTACACATGTTCAACAGCTCGTTAATGCAAATATCTAAACAGCCAATCACATGGCAGCAACTCAGTGTAGACATGGTAAAGACGATCTGCTTAAGTTCAAACTGAGCATCAGAATGGGGAAGAAAGGTGATTTAAGTGACTTTGTTAAATCTATGCCACAAAGAATTAAGGAAGTTCTGAAGGCAAAAGGGGTCCAACCTGGTACTAGCAAGGTGAACCTATAAAGTGGCTGGTGAGTGTATATAAATGTAAAAAGATAAGCTGTAAAGATCTTTAATTCGAGGCAGATGAACTTCTAGTTATGTGTTGCTGACATAATTCCTGTGGGTAGATTTTGCATAAGTTAACATGTTTACTTGCCTTTCATGGTTAAAAAAGAAGCTGAAAGGTTTGCAGGGATGAGATGGTAAATCTTATATAGTTTTACACTTTATTTATTGATTTTTGTTCAATTTACAAATTGTGGGACAAGTGAAAATAATTTTCTCTGGTAATAGACAGCATCTAAAGCTTGTTTTGAACCTAGAATACTACTGATATGATATTGAATATTCATGATCTAATCATTATTATTCAAAGAATTCCACAAAATATTGATGACATCAGTGCCGTTGGCTATCATGTGTTTTCAGAGCACAGAAATGATTCCTCACTAATTTCATCTGAGATCTAATCTTATCAAAATTCTGGCAGTGCGACAGACCCGACTCGAGGTTTGTGTGTCTCTGTAATGGAATTTGTTTCACTGCACAGAGTTTAAGCACAGCTAGTGATTCAGTGCAGCAGGGCATCTGGGTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCCGCCCTCCACGGCACAAGCGTCATTTGTTGACTGGCAGGCAGCGTGCCAGGAGCAGCATCAGTAAAATGCTGCTGAATTATACAGCCTTTACGACTCACACTATAAAGCAGCCATTTAAGGGGAACATCGTCATTTAAAGCAAAGACATAGTGTTGCTGTTTAAAGCTTTTATTGTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU130092 lncRNA upstream 156 7077179 ~ 7079432 (+) True G114532
TU129976 lncRNA upstream 139435 6938913 ~ 6940153 (+) True G114427
TU129986 lncRNA upstream 165300 6913454 ~ 6914288 (+) True G114436
TU130055 lncRNA upstream 268669 6810647 ~ 6810919 (+) True G114505
TU130051 lncRNA upstream 299665 6779718 ~ 6779923 (+) True G114501
TU130088 lncRNA downstream 482 7081414 ~ 7089754 (+) True CI01000020_07089227_07093896
TU130101 lncRNA downstream 9275 7090207 ~ 7090476 (+) True G114541
TU130105 lncRNA downstream 22256 7103188 ~ 7103391 (+) True G114545
TU130089 lncRNA downstream 93797 7174729 ~ 7175341 (+) True G114529
CI01000020_07050004_07055580.mRNA mRNA upstream 23760 7049394 ~ 7055828 (+) True CI01000020_07050004_07055580
CI01000020_07043558_07046909.mRNA mRNA upstream 32679 7043558 ~ 7046909 (+) True CI01000020_07043558_07046909
CI01000020_07029337_07034375.mRNA mRNA upstream 45150 7029337 ~ 7034438 (+) True CI01000020_07029337_07034375
CI01000020_07014667_07020555.mRNA mRNA upstream 58598 7014667 ~ 7020990 (+) True CI01000020_07014667_07020555
CI01000020_06992285_07002537.mRNA mRNA upstream 77041 6992285 ~ 7002547 (+) True CI01000020_06992285_07002537
CI01000020_07089227_07093896.mRNA mRNA downstream 8295 7089227 ~ 7093978 (+) False CI01000020_07089227_07093896
CI01000020_07097679_07107859.mRNA mRNA downstream 16747 7097679 ~ 7108984 (+) False CI01000020_07097679_07107859
CI01000020_07116109_07120411.mRNA mRNA downstream 35108 7116040 ~ 7120580 (+) True CI01000020_07116109_07120411
CI01000020_07160189_07169882.mRNA mRNA downstream 79173 7160105 ~ 7170046 (+) True CI01000020_07160189_07169882
TU129957 other upstream 270870 6803548 ~ 6808718 (+) False G114413
TU129960 other upstream 270870 6803548 ~ 6808718 (+) True G114413
TU129959 other upstream 271134 6803548 ~ 6808454 (+) False G114413
TU129963 other upstream 305514 6761887 ~ 6762502 (+) True G114416
TU129929 other upstream 434772 6624267 ~ 6644816 (+) True G114388

Expression Profile