RNA id: CI01000021_01100408_01104630.mRNA



Basic Information


Item Value
RNA id CI01000021_01100408_01104630.mRNA
length 737
RNA type mRNA
GC content 0.50
exon number 6
gene id CI01000021_01100408_01104630
representative True

Chromosome Information


Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1100408 ~ 1104630 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTTGGTCAAGGTTGTTTCTTGGTGGGAGATTTTTTTGTGAGACTCAGGGGGTTTTGGCCAAAGACATTTTCATTGCCCTTTGGATCTATGTTATCAGGTTCAGATCCTGTTCTTGCACTGAAGTCTCCACACAGCAGCACATTTCCCTGAGCCTGGAAATGGCTGATTTCTGTGTGGAGGTTGTTCAGATATTCCTCATCATAGGCTGTTCAGCTCATTTCTCCAGTCTGATGGGTTATCAGTATCATCAGAAACGCTGTGGCAGAGAGCTGCCAGACACACAGAAGCCCGTCTTCCTGTGCCAGCACTGTGGAAAGACCTATCGCTCCAAAGCTGGCCGTGACTACCACCTGCGCACTGAGCACCCTGTCACCGCCCTGTCCACTCACTCGGAGATCGCAGAGGACGAGCTGGCCAAAGACTGGGGCAACAAACGACGCATCAAAGATGACCTCGTACCAGACATCAAAAGGCTAAACTACACACGACCAGGCCTCCCAAACTTCAGCCCTGAAACTGTGGAGACCTGGAAGAATGAGGTGAAGGAAAAAGGATTTATCTGCTGCCCCAATTGCAACTGTGAGGCTATTTACTCAAGTGTATCTGGACTTAAAGCTCACTTGGCAAGCTGTAACAAGGGAGGGGGCGACGTAGGGAAGTACACTTGTTTGCTCTGTCAGAAGGAGTTTAACTCTGAGAGTGGCGTGAAGTATCATATCAGCAAGACACACTCTCAG

Function


GO:

id name namespace
GO:0046872 metal ion binding molecular_function

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131449 lncRNA upstream 206449 893528 ~ 893959 (+) True G115721
TU131407 lncRNA upstream 217283 867315 ~ 883125 (+) True G115681
TU131444 lncRNA upstream 223025 876775 ~ 877383 (+) True G115716
TU131425 lncRNA upstream 242388 856335 ~ 858020 (+) True G115697
TU131427 lncRNA upstream 247965 848239 ~ 852443 (+) True G115699
TU131413 lncRNA downstream 5825 1110455 ~ 1115336 (+) True G115685
TU131478 lncRNA downstream 77094 1181724 ~ 1181948 (+) True G115750
TU131482 lncRNA downstream 80039 1184669 ~ 1184936 (+) True G115754
TU131487 lncRNA downstream 84852 1189482 ~ 1189711 (+) True G115759
TU131412 lncRNA downstream 207197 1311827 ~ 1316148 (+) True G115684
CI01000021_00972210_01064592.mRNA mRNA upstream 35693 971213 ~ 1064715 (+) True CI01000021_00972210_01064592
CI01000021_00822848_00831637.mRNA mRNA upstream 268728 822848 ~ 831680 (+) True CI01000021_00822848_00831637
CI01000021_00748689_00750893.mRNA mRNA upstream 349408 748141 ~ 751000 (+) True CI01000021_00748689_00750893
CI01000021_00699356_00722821.mRNA mRNA upstream 377431 699356 ~ 722977 (+) True CI01000021_00699356_00722821
CI01000021_00680850_00686621.mRNA mRNA upstream 413122 680850 ~ 687286 (+) True CI01000021_00680850_00686621
CI01000021_01129847_01154032.mRNA mRNA downstream 25217 1129847 ~ 1154308 (+) True CI01000021_01129847_01154032
CI01000021_01219723_01256723.mRNA mRNA downstream 115093 1219723 ~ 1257080 (+) True CI01000021_01219723_01256723
CI01000021_01264188_01268643.mRNA mRNA downstream 157808 1262438 ~ 1268865 (+) True CI01000021_01264188_01268643
CI01000021_01274202_01280110.mRNA mRNA downstream 168964 1273594 ~ 1281759 (+) True CI01000021_01274202_01280110
CI01000021_01288735_01291953.mRNA mRNA downstream 183966 1288596 ~ 1291962 (+) True CI01000021_01288735_01291953
TU131221 other upstream 616444 480530 ~ 483964 (+) True G115519
TU131419 other downstream 227943 1333998 ~ 1334409 (+) True G115691
TU132002 other downstream 1185187 2289817 ~ 2297195 (+) True G116236
TU133219 other downstream 2133224 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 2164514 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 2219642 3324272 ~ 3328233 (+) True G117202

Expression Profile