RNA id: CI01000021_01219723_01256723.mRNA


Basic Information

Item Value
RNA id CI01000021_01219723_01256723.mRNA
length 2490
RNA type mRNA
GC content 0.52
exon number 10
gene id CI01000021_01219723_01256723
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1219723 ~ 1257080 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGGCCCCATTTGGTAACACTCCACGTCCCTGCGATTTAGCCCCAACCAGGACGGCTTCTGTGCTGCTCATAGAGGATGCTAGTGGGGAAGTGAAGCCTATTGGGGATATCTGCATATATTCTCTCTTTCCTCTGTGCACGTTCAAGAACAATGCATTGCCTCATCTAGCTCTCCTCCCCCATCTCTCTATCTTAATGATTATAGCAGAGATGCTCAGGTGTTCACTGTTCAACCCTTTAATCATGATGTTTCTCTCTGTTCGCTTTATTAGCTGCCAAATAAAATCACCCAACTCTGTTCAGGAGAAGCAGCCACCCATTAGTCCAATGAATAACCGGAAGGAAGACATGGAGATCACGTCGCACTACCGGCAGCTCCTGCGGGAGCTGAACGAGCAGCGGCAGCACGGCATCCTGTGCGACGTGTGTGTGATCGTAGAGGGCAAAATCTTCAAGGCGCACAAGAATGTGTTGCTGGGCAGCAGCCGCTACTTCAAGACACTTTATTGTCAGGTGAAGAAGGGTTCAGAGCAGCAGGCCACCATCACGCACCTGGACATCGTCACAGCCCAAGGCTTCAAGACCATCCTTGATTTCATGTACTCTGCCCACTTGGCGCTCACAAGCAAGAATGTGATTGAGGTGATGTCGGCTGCCAGCTACCTGCAGATGACCGACATAGTGCAGGCATGTCACGGCTTCATCAAGGCAGCGCTAGACATCAGCATTCGCTCCGAGCTCGCAGATGAACTAGCGGATATTGAGATGGGTAACGTGGTGAGCTCTATCGGAGGCGGGGCTGGGCCTGGTGTGGGCGGAGCCTCGGAGGCACTGGCATCTATGATCTCGGCCCGCAGCTCCTCGCCGTGGCTGGCCAGGCGCACTAGTCCAGCAAATTCATCTGGAGACTCGGCCATCGCTAGCTGCCACGAAGGCAGCAGCAACTACGGCAAAGAGGACCAGGAACCCAAAAGCCATGAGAGCCAGGAGGATGCTTGTTTGCAGCCCTTGTGGCCTGCTGATTACCGCTCTGTCCAGGTCAAAGAGGAGCAGGTCTCCCCCTCCAATCTGCAAGACGGGGCTGGCCGAGGGGCACAAGGCACACCCGGAGAGCAAGGTGGAAGAGGAGAGGGGGGCTGGCAACCCCCTGGCTCGGGCCGCAGGAAGAACCGTAAGAACAAGGACACAGTCAGACACATAACCCAGCAGAATGAAGGGGACAGTCGGACAGCATCGCCACTACCATCCATGCTCTCCACCCCTGGCTGGAGCTACGGCAACCAGGACATTCCAGGAACCGAGGACTTGAAAAACGGCAAATTGCTTTGGATGTCATTTGATAATATGGGCCGTATCTCGATGCTCAGTGAAGATGGGAATATTGCTTGGTACACAATACAGGCTCAGGCTTGGGCGAATCAGATCAGGGTTTACTCCCTGTTGAAGAGGGGGGTTTCTGTGGTTTGCTGTGGCTGTGAACTTCATGCTATCTTTAGGGGGATTTTTGAGGCTGCTCATCAGCTCTATCTCTCGGTTTTTACACTCGCTCTCACTTCTCTCTCTCCGGGTCTCTATAGTCAAAAGTTTTGGAGATTTAGGACTTTCCTCTTTCATGCAGTACTTGCATCGATTGGAAATAGCTGCCCCAGGGAGTTACCAAGAGGGCCACCAAGTCAGCTAATTTGCCTGATTCTGAAAGGGAATACTTTGGGGTATTTTTTCAACCTAAGATGTGTATCACAGTGGGCTCATAACGACTATGGGAATGATCCCTCCTGTATCTCCATGTGGTGCATTGAGTGGGATGTAATGAACGGTGCAGAAGTGACGGAACCCAACATGTCCGACAGCCGCAGCGAGCGCATGGACCTCCTGGTAAAGCAGGAGGAGGCCGCAGCGGGGGACAGCGGTTTTCTGTCCGGGGAGCGGGATGAGGCCGTGGCCCAGGAGAGAGGGGGCTCGGTGGCCAACCTGCGTGCCGCCCTCATGAGCAAGAACAGCTTGCTGTCTTTGGGGGCAGAGATGCTCGGAGAGGAGAACCCGCTTCTGTTCGAATACCTGCCCAAGGGAGGACACTCTCTATCCCGGCATGAAGACTCTCCTATAGGTTTTGACAGGTCAGGGATTCCATAGGGTCCTGTAGGGACTTTTAGGTACTTATCTGCTGGGCTATATGTGCTATAGTGGAGTTTTTGTATGTTTTCTCTGTAAACATTGATGTTTCTAGAGGATCTATAGAGACTTGTATGTGGTCCTGCTAGAATGGTAAAGGCTGTATGTGCTGTCATTGAGTGCTTCAAGACTCACTGTTGTATTTTATGTGTCCACAAACCTTGGAGTTTCCATAGAATCTTATACAGGGACTCTTGGCTTGGGACTCATTTGTGCTCTTGATAGGATGGTATATGCTCTTTTGCTACCATCAAATGCTTAAAAACTGTCTTATAGGCTTCTGTATGCCTTTGTATACCTCTGTGCCCCTGTGTCTTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131487 lncRNA upstream 30012 1189482 ~ 1189711 (+) True G115759
TU131482 lncRNA upstream 34787 1184669 ~ 1184936 (+) True G115754
TU131478 lncRNA upstream 37775 1181724 ~ 1181948 (+) True G115750
TU131413 lncRNA upstream 104387 1110455 ~ 1115336 (+) True G115685
TU131449 lncRNA upstream 325764 893528 ~ 893959 (+) True G115721
TU131412 lncRNA downstream 54747 1311827 ~ 1316148 (+) True G115684
TU131524 lncRNA downstream 127859 1384939 ~ 1386229 (+) True G115791
TU131513 lncRNA downstream 151123 1408203 ~ 1408451 (+) True G115780
TU131550 lncRNA downstream 153247 1410327 ~ 1410607 (+) True G115817
TU131558 lncRNA downstream 169395 1426475 ~ 1426764 (+) True G115824
CI01000021_01129847_01154032.mRNA mRNA upstream 65415 1129847 ~ 1154308 (+) True CI01000021_01129847_01154032
CI01000021_01100408_01104630.mRNA mRNA upstream 115093 1100408 ~ 1104630 (+) True CI01000021_01100408_01104630
CI01000021_00972210_01064592.mRNA mRNA upstream 155008 971213 ~ 1064715 (+) True CI01000021_00972210_01064592
CI01000021_00822848_00831637.mRNA mRNA upstream 388043 822848 ~ 831680 (+) True CI01000021_00822848_00831637
CI01000021_00748689_00750893.mRNA mRNA upstream 468723 748141 ~ 751000 (+) True CI01000021_00748689_00750893
CI01000021_01264188_01268643.mRNA mRNA downstream 5358 1262438 ~ 1268865 (+) True CI01000021_01264188_01268643
CI01000021_01274202_01280110.mRNA mRNA downstream 16514 1273594 ~ 1281759 (+) True CI01000021_01274202_01280110
CI01000021_01288735_01291953.mRNA mRNA downstream 31516 1288596 ~ 1291962 (+) True CI01000021_01288735_01291953
CI01000021_01332646_01333910.mRNA mRNA downstream 74585 1331665 ~ 1333951 (+) False CI01000021_01332646_01333910
CI01000021_01463736_01472529.mRNA mRNA downstream 206656 1463736 ~ 1472886 (+) True CI01000021_01463736_01472529
TU131221 other upstream 735759 480530 ~ 483964 (+) True G115519
TU131419 other downstream 75493 1333998 ~ 1334409 (+) True G115691
TU132002 other downstream 1032737 2289817 ~ 2297195 (+) True G116236
TU133219 other downstream 1980774 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 2012064 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 2067192 3324272 ~ 3328233 (+) True G117202

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042771 True 1545 mRNA 0.56 4 NC_007134.7 13721826 ~ 13806495 (+)