RNA id: CI01000021_01717640_01718394.mRNA



Basic Information


Item Value
RNA id CI01000021_01717640_01718394.mRNA
length 722
RNA type mRNA
GC content 0.34
exon number 2
gene id CI01000021_01717640_01718394
representative True

Chromosome Information


Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1717640 ~ 1718879 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGGTGGCATTAGAGAGGCAGGTGTTTGATTTCTTGGGCTATCAGTGGGCTCCTATCCTTGCTAACTTCTTCCACATCCTGGTTGTCATCCTGGGCCTGTTTGGCACCATTCAGTACAGACCTCGCTACATAGTGGTGTTCCTCACTGGGTCAATCCATGTTGCAGCTTCACTTCAAGTTCAACAGGATTATCAAGCCTTTGGTTTAGTTGATGAGACGGGAAGCAAACTATTTTAGCTATTTCAGTTTTTAAATAGTCAATAGCCTTCAGTTTACATCATTACTCAGTAAAACCATGGCTATGTTTGAAATAGCATAATATGCTAATTTTTATTATTGCTACATTAATTTATATTCTAATTTATTTCTGTATATAGTATACTCTACAAAAGTATGTCAATTTTCTGCATGGTTCGCAAAACAATGACCTGCTAAATTTGCCAAAATGTGTAAATTACGTGGAAGAATATATTCCACAATGCAATGTACCTGTTCTTCCATTTTCAGCATGACAATGAACAAGTAATATTAGAAAAATTAAAAAATATTTTAAAAATGCTTAATGACCACGTTTATTTCCAAAATGATGCCTAGATGCTGTATGAAATTTAGTCATGTGACAACAATGCTGCATACTATTGTTTGAAACATTTATTGTTGCAAAATGCATACTTTTTCATTTACTGTCAAATATGCATTGTATTTTGCTCAGTATGCACTAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131717 lncRNA upstream 44830 1672470 ~ 1672810 (+) True G115959
TU131699 lncRNA upstream 71762 1645599 ~ 1645878 (+) True G115941
TU131623 lncRNA upstream 200698 1516681 ~ 1516942 (+) True G115870
TU131575 lncRNA upstream 211498 1496436 ~ 1506142 (+) True G115836
TU131607 lncRNA upstream 267286 1443255 ~ 1450354 (+) True G115856
TU131727 lncRNA downstream 51093 1769972 ~ 1770203 (+) True G115968
TU131728 lncRNA downstream 82279 1801158 ~ 1802398 (+) True G115969
TU131729 lncRNA downstream 83533 1802412 ~ 1803161 (+) True G115970
TU131735 lncRNA downstream 92004 1810883 ~ 1811363 (+) True G115973
TU131577 lncRNA downstream 93067 1811946 ~ 1876510 (+) True G115837
CI01000021_01519982_01528860.mRNA mRNA upstream 188535 1519982 ~ 1529105 (+) True CI01000021_01519982_01528860
CI01000021_01506852_01513139.mRNA mRNA upstream 204334 1506216 ~ 1513306 (+) True CI01000021_01506852_01513139
CI01000021_01463736_01472529.mRNA mRNA upstream 244754 1463736 ~ 1472886 (+) True CI01000021_01463736_01472529
CI01000021_01332646_01333910.mRNA mRNA upstream 383689 1331665 ~ 1333951 (+) False CI01000021_01332646_01333910
CI01000021_01288735_01291953.mRNA mRNA upstream 425678 1288596 ~ 1291962 (+) True CI01000021_01288735_01291953
CI01000021_01771612_01785627.mRNA mRNA downstream 52510 1771389 ~ 1785666 (+) True CI01000021_01771612_01785627
CI01000021_01977248_01980449.mRNA mRNA downstream 258060 1976939 ~ 1980506 (+) True CI01000021_01977248_01980449
CI01000021_02230472_02252713.mRNA mRNA downstream 511112 2229991 ~ 2253146 (+) True CI01000021_02230472_02252713
CI01000021_02269000_02272309.mRNA mRNA downstream 549810 2268689 ~ 2272396 (+) True CI01000021_02269000_02272309
CI01000021_02322467_02328819.mRNA mRNA downstream 603588 2322467 ~ 2329864 (+) True CI01000021_02322467_02328819
TU131419 other upstream 383231 1333998 ~ 1334409 (+) True G115691
TU131221 other upstream 1233676 480530 ~ 483964 (+) True G115519
TU132002 other downstream 570938 2289817 ~ 2297195 (+) True G116236
TU133219 other downstream 1518975 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 1550265 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 1605393 3324272 ~ 3328233 (+) True G117202
TU133500 other downstream 2237267 3956146 ~ 3957752 (+) True G117484

Expression Profile