RNA id: CI01000021_02317457_02320931.mRNA



Basic Information


Item Value
RNA id CI01000021_02317457_02320931.mRNA
length 1558
RNA type mRNA
GC content 0.42
exon number 8
gene id CI01000021_02317457_02320931
representative True

Chromosome Information


Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2317457 ~ 2321663 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


AGACCTCTAAACTACATTTGATCAGCTCTTCATGGTGTTGGATAAATCATTTCCATGTGCAAATAAAGAGAAGGAGCGGTGTAAACATGGATGGGAGTTGTTCACTGAGCATTAGAAGAGGGCGGACACACGCTTGACAAGCTGATTGACAGCCACAAAACAGGAGAAAACGTTTTATATGCCTTCTTAAATATGTATTTCATAATACATTTATGTACAGTTTTGTGCATTTTTGCTTGGTGCATTTGTGTTCAACTTTTTATTCTGAATCATTTCGTATATCATAACATGTGAATCGTTTCTAGTTGCAGCAATAACTGTTTTTAATTTAACCGCCATACATACAACATGCAACACTGCATTTAGAGTATAAGAAAATATGATTCTATTATCTATATATTAAAGCTACATATTCATTACGTCAAAACTATCATGGATTTCTTTTTATTACAAGAAGTATTTAAAATTAAGGAAGTTAATTACTCATAAGTGATTCATTACAATGACAAAAATAATCATTGCAGCATTTTGCAATGTACAGGAAAATTGTGAAACTATTCGCCAGACTGCCTGGAATTACTGTGTCTTTCAATGGCACTCCAGGTTGATAGGTGGCGCTGAACGCAACACATGTTAGCGCTTCAAGCACAGAGGAAGACAATCATTGAATGGCGGGTTACAAAATTTTCATAACAGTGTTCGATCTGATTCCGACTCGAGTCGTATAACATAATGGCATCTAAAAAGCCGTTGAATATACGTAAAGTTGAGAAAACAGCTTCAAGTGACTCCAAAAATTTATCCACTGAGAATGAAGTCAGCAGTGGGAATAACAGTGGTGCAAGGAGGAAAACCAAAACGTCGGGCACAATTGTGAAGTCTAGGTACATGCAAACTGAAACAAAGGCTCCTGCAAAGAGCAGTGTACAGCAGCAATTGCCTCTGGCACCCAGACCAACCAGGCCATCCTCTCCCAGAGTAGGCGGCACGCGAAAACCGAGGGACGGCGTCCTGTCGAGACGTACGATGAGCTGTCTGGCAGACAATGACTCCACCTTGGTCTCCAGTGTTCTGGAATCCTCACATTTGGCAGGAAATGTCTTTCAGTCGACTGTGTTGGATGGCCACTGCATACGTCCAGATTTTGATGTGTCCGTCATTAAAGATAAAGTTGCGCCGCCAAGCACAGTGGACCCCGAGAATGAAGAAAGGGACATGGCGATGGAGACGTTTATACTGGCCTTCCTCACTGCTAAGATTCAGCATAATACCCGAAAAATGAGAGAGGAGTTTGAGAGGAACATTATGGCCGTCATGGAGAAAGAGCAGCAGTTGTGTGCACAAGTTAACCAAAAGAAGCAACAGTATCTGCTGCTGGAAAAGCAGAAACAGCTCAACAGTTTACTGGACTTACAGATTGAGGCTTTAACTCCTGTTGCTGCTGCAGCAAAGACATTTGCAGAGGAGTACAAGTCATTTGCCACAGCCGTTGATGCCACGAGACACCAGCTTCCTGTGAAGAATGTGCACATTGGAGAGGACCCAGAGCAGTTTTTAG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU132774 lncRNA downstream 66172 2250802 ~ 2251285 (-) True G116872
TU132750 lncRNA downstream 128965 2187864 ~ 2188492 (-) True G116848
TU132749 lncRNA downstream 129639 2187578 ~ 2187818 (-) True G116847
TU132707 lncRNA downstream 506118 1810846 ~ 1811339 (-) True G116805
TU132736 lncRNA downstream 529775 1787299 ~ 1787682 (-) True G116834
TU132794 lncRNA upstream 6400 2328063 ~ 2329874 (-) True G116889
TU132796 lncRNA upstream 8563 2330226 ~ 2330431 (-) True G116891
TU132808 lncRNA upstream 9020 2330683 ~ 2331076 (-) True G116900
TU132804 lncRNA upstream 13804 2335467 ~ 2336469 (-) True CI01000021_02335864_02337990
TU132879 lncRNA upstream 213405 2535068 ~ 2535384 (-) True G116957
CI01000021_02309119_02315738.mRNA mRNA downstream 1719 2309024 ~ 2315738 (-) True CI01000021_02309119_02315738
CI01000021_02299075_02305974.mRNA mRNA downstream 11483 2298424 ~ 2305974 (-) True CI01000021_02299075_02305974
CI01000021_02290326_02297117.mRNA mRNA downstream 20340 2289943 ~ 2297117 (-) True CI01000021_02290326_02297117
CI01000021_02191178_02193192.mRNA mRNA downstream 124109 2190044 ~ 2193348 (-) True CI01000021_02191178_02193192
CI01000021_02104468_02137901.mRNA mRNA downstream 177548 2104098 ~ 2139909 (-) True CI01000021_02104468_02137901
CI01000021_02335864_02337990.mRNA mRNA upstream 13700 2335363 ~ 2341260 (-) False CI01000021_02335864_02337990
CI01000021_02386235_02398978.mRNA mRNA upstream 63923 2385586 ~ 2398978 (-) True CI01000021_02386235_02398978
CI01000021_02458161_02471710.mRNA mRNA upstream 136491 2458154 ~ 2471710 (-) True CI01000021_02458161_02471710
CI01000021_02492524_02493429.mRNA mRNA upstream 170474 2492137 ~ 2493429 (-) True CI01000021_02492524_02493429
CI01000021_02503590_02509554.mRNA mRNA upstream 180905 2502568 ~ 2509554 (-) True CI01000021_02503590_02509554
TU132758 other downstream 106961 2209921 ~ 2210496 (-) True G116856
TU132617 other downstream 954653 1361878 ~ 1362804 (-) True G116730
TU132800 other upstream 9651 2331314 ~ 2334316 (-) True G116893
TU132929 other upstream 391122 2712785 ~ 2713247 (-) True G116997
TU133731 other upstream 570197 2891860 ~ 2892335 (-) False G117683
TU133963 other upstream 722356 3044019 ~ 3044787 (-) True G117893
TU133802 other upstream 1515759 3837422 ~ 3931056 (-) True G117733

Expression Profile