RNA id: CI01000021_02877008_02877864.mRNA



Basic Information


Item Value
RNA id CI01000021_02877008_02877864.mRNA
length 2005
RNA type mRNA
GC content 0.47
exon number 2
gene id CI01000021_02877008_02877864
representative True

Chromosome Information


Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2876517 ~ 2878823 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATTTAAAAAGATTGTTCATATACTCAACCCTGTTACAGAATACAAATATGATATTTTCTTTTGATCCTAAATGTTTTTTTTATTTATTTAACTTTAACTTTTTTTATTTTGTAACGTAATGTCCACTGAAGGCAAGTTGAGGTTGAGAACCCATGTGCAGTTTTATTGACAAACAGTGAACCAGATGCACAACAAACAAGGAAGAGGAAGAGGGCCTGGATTGTGGCCTTTATCATGGAGTGGAAGTGGGCTTGGATTGTGGCCTGGACTATGGAGCGGTGCCAGGTCTGGACAGTGGAAAAGTGGAGGGGCCTGGTCTGTGGAGCAGTGGACGAGACCATAGATTGTGGACCAGTGGCAGGCCTGGACCGTGGAGCAGTGGTGGGCCTCGTCCGTGGAGCAGAGGCGGGCTTGGTCCATGGAGAAGTGGAGGGGCCTGGACCGTGGAGTAGTGGCAGGCCTGGTCCGTGGAGCAGTGGCTGGCCTGGTCTATGGAGCAGTGGCAGGCCTGGTCCGTGGAGAAGTGGAGGGGCCTGGACCGTGGAGAAGTGGGTGAGACCATAGACCGTGGAGCAGTGGCAGGCCTGGACCATGGAGCAGTGGCAGGCCTGGACCATGGAGCAGTGGCAGGCCTGGACCATGGAGCAGTGGCAGGCCTGGTCCGTGGAGCAGTGGCAGGCTTGGTCTGTGGAGAAGTGGCGGGCCTGGTCCGTGGAGCAGTGGTGGGCTTGGTCCGTGGAGCAGTGGTGGGCCTGGTCCGTGGAGCAGTGGCTGGCCTGGTCCACCGTGGAGCAGTGGCAGGCCTGGTCTGTGGAGCAGTTGTGGGTTTGGTCCATGGAGAAGTGGACGAGACCATAGACTGTGGAGTAGTGGCAGGCCTGGACCGTGGAGCAGTGCATGAGAGCATGGTGGTCATGGTGGAGCCGGCAGTGACAGGGACCACCAGGGTGGAGCTTCTGAAGGGGAGTACCACCTCAGTAGAGCCGGAGACCACCATAGTGGAGTTGGTGGATCAGGAATCCATGTCTGAGCAGAAACACGGATAGCCTCCATGGCCACGACAGAGCGGTCAGGAACAGCCCCTGTGGCCATGGCAGGGACGTTTGTGGACAGCCTCCGTAGCCGTGACAGAGCAGGCGTGGACGACCTCTGTGACCATGAAGGAGGCCCAGAAAGTCAATGAACGGCCTCTGTGACAGGGTGAGAAGACGCCTCGGGAGGAACAGTAATATACTCCACCGGCTCTGGTCTGGAGGAGAAGTGTGTGCGGCCCACACACACAACATAGCGCTTGCCATCAAAGGAAGTGGAGTCGACCAAAACCAAAAACAGATGTGACATTTAATTTTAGTCTATTTAATTATAATATTTATTTATTTATGTATTTATTTTTTAATGGTACAAAAATACAAAATTACCTTTTTCAGGTCCTATTTTGTCTTCCTTTTCATGCAATGTCTTTGCCATTGTGTGCTCACATAAATTCTTTGTTGCAATGTTAAGGATTTTGGGAAAAGGATGTTAAGGATCATGAAATACTGTTGTTAAAGAAAAAGCTCACATACTCATATAGAGCATGCAAGTATTTTAACTCAATAAGAGTTTTAGTTTTTGTTTTGTTAATCATTTACTTTAAAACTTTATTAATGTTAAAAAAAATATTTTATATTACTTGTGACTATAATGCATCTCAATTTTATTTTACTGTGCTGTATGTTATTCATGTTTATGTAAAATGTTCAAGAATGCATGCAAAAAACAAACAAACAAAAACAGTAGTATTATTCACCACACAGCAGGACACAGATATGAATCAGACAGAACCGTCAAGTTTAATAAGTTATTTAATGAAGGATTTTGTGAGTTAATAATTCATCTACAATTAAAGTACAGCAAATGAACATTCAAGCCAGCCATTGTGCAGACTTCAGCCCACTCCTTCTGCAAGGCACTGAAGCATTTAAGACTGGATAGAGAGCATTCTTATTAGCTGCATGCTGATGAA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU133097 lncRNA upstream 6190 2869955 ~ 2870327 (+) True G117138
TU133096 lncRNA upstream 8389 2867811 ~ 2868128 (+) True G117137
TU133020 lncRNA upstream 11362 2820589 ~ 2865155 (+) True G117075
TU132970 lncRNA upstream 36600 2818461 ~ 2839917 (+) True G117031
TU133017 lncRNA upstream 59824 2812483 ~ 2816693 (+) True G117073
TU133139 lncRNA downstream 10416 2889239 ~ 2889861 (+) True G117161
TU133142 lncRNA downstream 13284 2892107 ~ 2892529 (+) True G117164
TU133160 lncRNA downstream 145209 3024032 ~ 3024233 (+) True G117182
TU133221 lncRNA downstream 360512 3239335 ~ 3299281 (+) True G117239
TU133181 lncRNA downstream 390321 3269144 ~ 3324870 (+) False G117202
CI01000021_02581650_02610697.mRNA mRNA upstream 264910 2581650 ~ 2611607 (+) True CI01000021_02581650_02610697
CI01000021_02495559_02501217.mRNA mRNA upstream 374790 2495559 ~ 2501727 (+) True CI01000021_02495559_02501217
CI01000021_02402058_02447882.mRNA mRNA upstream 428635 2401679 ~ 2447882 (+) True CI01000021_02402058_02447882
CI01000021_02378299_02383589.mRNA mRNA upstream 492757 2378044 ~ 2383760 (+) True CI01000021_02378299_02383589
CI01000021_02346223_02369457.mRNA mRNA upstream 505428 2346005 ~ 2371089 (+) True CI01000021_02346223_02369457
CI01000021_02930718_02985342.mRNA mRNA downstream 51895 2930718 ~ 2985342 (+) True CI01000021_02930718_02985342
CI01000021_03044076_03086657.mRNA mRNA downstream 165253 3044076 ~ 3086657 (+) True CI01000021_03044076_03086657
CI01000021_03101146_03115161.mRNA mRNA downstream 222130 3100953 ~ 3115468 (+) True CI01000021_03101146_03115161
CI01000021_03119361_03125084.mRNA mRNA downstream 240538 3119361 ~ 3126781 (+) True CI01000021_03119361_03125084
CI01000021_03164405_03179692.mRNA mRNA downstream 285582 3164405 ~ 3179949 (+) True CI01000021_03164405_03179692
TU132002 other upstream 579322 2289817 ~ 2297195 (+) True G116236
TU131419 other upstream 1542108 1333998 ~ 1334409 (+) True G115691
TU131221 other upstream 2392553 480530 ~ 483964 (+) True G115519
TU133219 other downstream 359031 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 390321 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 445449 3324272 ~ 3328233 (+) True G117202
TU133500 other downstream 1077323 3956146 ~ 3957752 (+) True G117484
TU133514 other downstream 1154177 4033000 ~ 4035676 (+) True G117493

Expression Profile