RNA id: CI01000021_03246184_03250332.mRNA


Basic Information

Item Value
RNA id CI01000021_03246184_03250332.mRNA
length 722
RNA type mRNA
GC content 0.43
exon number 3
gene id CI01000021_03246184_03250332
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 3246011 ~ 3250332 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CCATACTTTGATCGTAACTCTAACAAGAGGTCATGTTTTGACGATGATGTGGTGCAAACTGAGCCAGGAAAAGGGGAAGGGCCTCGAGTGAGCGGACAAAAACAGCTGCTCTTGTGTGCTGGGGAAACCTCATCCAGAGAGAGGGAGAGAGGAGAGACGGACCAGCAAGGTCCAGATCTCTATATGGGTTGCGCCCTGTGTGCGGATAGCTGTGGGGACGAGCCAGATCCGGTACCCGTGAGAGGGTCTGTAAGGAGGGAGAGAGCAAAGTCCAGGGGAAACATGAGGCTGACCAAGAGTTTAATGGTAATACTCCTAAATCAGTGCATGATCATGTCACGTAGAAAAAGATTTTGGTCTTCTGATGAGACTATAATGAAACACTATGTTATGCAAGCATATAACCCCTTTATGATGCTATCTAACAAACAATCTGACATTCAACTAATGCTTTTTAAGCCCCAGTGGAGTAACCGAGGTTTTGGTGTCTTAGTCAATAGCCCATGGAGATGCTTCATAGATAAACCCTTGCAGGATCTGAACCTATGACCCTTCAGATCCTTAACCACTAACAACTGGCCCACACTGAAAGATTTTTTAAAATCTTATCAGATTTTAACGTGACTTTAGAGTAAACAAATGTGGATGATGGGCAAGAAGAAAAAAGAAATGGCAATAATAGTGTTTGGACTGCTTTTTACAGAAAAATCACTGAGAAAAAA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU133868 lncRNA downstream 14969 3226220 ~ 3231042 (-) True CI01000021_03184886_03225117
TU133858 lncRNA downstream 110183 3128169 ~ 3135828 (-) True G117789
TU133818 lncRNA downstream 127503 3109921 ~ 3118508 (-) True G117749
TU133846 lncRNA downstream 136152 3109342 ~ 3109859 (-) True G117777
TU133987 lncRNA downstream 165514 3080216 ~ 3080497 (-) True G117915
TU134034 lncRNA upstream 86937 3337269 ~ 3337605 (-) True G117957
TU134045 lncRNA upstream 99383 3349715 ~ 3350490 (-) True G117966
TU134053 lncRNA upstream 113716 3364048 ~ 3364254 (-) True G117974
TU134063 lncRNA upstream 124292 3374624 ~ 3374944 (-) True G117984
TU134064 lncRNA upstream 124701 3375033 ~ 3375354 (-) True G117985
CI01000021_03184886_03225117.mRNA mRNA downstream 18648 3184566 ~ 3227363 (-) False CI01000021_03184886_03225117
CI01000021_03088285_03098959.mRNA mRNA downstream 147052 3088025 ~ 3098959 (-) True CI01000021_03088285_03098959
CI01000021_02791299_02829637.mRNA mRNA downstream 416132 2790485 ~ 2829879 (-) True CI01000021_02791299_02829637
CI01000021_02620174_02687913.mRNA mRNA downstream 558098 2619568 ~ 2687913 (-) True CI01000021_02620174_02687913
CI01000021_02522404_02530893.mRNA mRNA downstream 715118 2522053 ~ 2530893 (-) True CI01000021_02522404_02530893
CI01000021_03267771_03288743.mRNA mRNA upstream 16970 3267302 ~ 3288743 (-) True CI01000021_03267771_03288743
CI01000021_03319954_03323293.mRNA mRNA upstream 68778 3319110 ~ 3323340 (-) True CI01000021_03319954_03323293
CI01000021_03324720_03328120.mRNA mRNA upstream 74023 3324355 ~ 3329454 (-) True CI01000021_03324720_03328120
CI01000021_03438153_03448377.mRNA mRNA upstream 186428 3436760 ~ 3448377 (-) True CI01000021_03438153_03448377
CI01000021_03572797_03577241.mRNA mRNA upstream 322437 3572769 ~ 3577582 (-) True CI01000021_03572797_03577241
TU133963 other downstream 201224 3044019 ~ 3044787 (-) True G117893
TU133731 other downstream 353676 2891860 ~ 2892335 (-) False G117683
TU132929 other downstream 532764 2712785 ~ 2713247 (-) True G116997
TU132800 other downstream 911695 2331314 ~ 2334316 (-) True G116893
TU132758 other downstream 1035515 2209921 ~ 2210496 (-) True G116856
TU133802 other upstream 587090 3837422 ~ 3931056 (-) True G117733
TU133799 other upstream 677458 3927790 ~ 3931056 (-) False G117733
TU133801 other upstream 677458 3927790 ~ 3931056 (-) True G117733
TU133831 other upstream 794952 4045284 ~ 4045446 (-) True G117762
TU134763 other upstream 1499765 4750097 ~ 4767372 (-) True G118639

Expression Profile