RNA id: CI01000021_04576127_04585164.mRNA



Basic Information


Item Value
RNA id CI01000021_04576127_04585164.mRNA
length 1134
RNA type mRNA
GC content 0.49
exon number 5
gene id CI01000021_04576127_04585164
representative True

Chromosome Information


Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 4576127 ~ 4585311 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


ATGTGTGATTATCCACGCTTGAACAACAGGTGGTGGATTGACAAGACCACAACAGGCGCAGCAATCTGCATCTGGTTGGATTGCCTGAAGGATCCGAAAAGGACGATGTTTTTTTTTAAAAGATCGCTGCCGACGTGGCTCCCTTCTCTGGCGTGTAGGGAGATTGAAGTGGAACGAGCACAGGGCGTGTACACTAAGGTCTCCTCAGATCGCGCTAAACCTCGGGTCTTTCTCATTAAACTTTTGCGATACACAGACAGGGAGCTCATTCTGCGGGCTGCCAGACTTCATGCTCCGCTGCTCAAGATGCGGATATTTGCTCCTTGTCTCTGTCTGATCATGATGGTAATTTGTACAGATTATCTTTGGTCCCCCGGCCGTCTCGAGCCTCTAGATGGTGATTTAACCCTAAATTGTTACAGGACGAAAGCTTTTGCATTATTTATCTGTCTCTTCTTGAGCATTCATACAAACCCTATTACAACTGTTTGGTCCAAGGATCTTAATGAGGATGTGCATGTTTTATTTTCGGATAAGGGCAGTCTGCAGGATGCTCCAGACATACAGCTACAGTCACCACCCTACCTCTACACTGGCACTTCAAGATTGCTTGGAGAGGCAGAGGGCTGGATGCCCGAGCATCCGCCAACCACCATTGACACTGCTCTCATGATATCTCTGTCTACCGATTGTCATCCCCTCATAAACTCCCCAGAGATGCACGCTAACATCTGCACGACCACTTCCAGACTAATACGCTGGAGGGAGGCCAACACTTTCCTGGTGGGGGCCAGGAATGCATCAAACCATGGCAGTTGTTGTCTGCTTGGTGGAACGGACTGCCTCGGGAGACAGTCTCTTGCTGTGGACCAAGTCCTTCAACAAATCTGTCTGGTAGGCCTGCAGCACTGCCATACTTTACAAGGCCCAACTAGCTTGGCCCGCCGCTGCGTATACCCTACCCACAATGTGTCTGCCATGGCTTAGAAGATAAGACTGGAGTCTTCAAGGAAGACACCATGCCTGGGGAGAGATGGCTCATGAGCATCTTTTTGTACCAAAACTTGCACAGTCCCTTGATGCTACCACGCGAAATGAATATGGTTTCTCCCACGATCTTGTCACTTCTAGATA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU133684 lncRNA upstream 105222 4406964 ~ 4470905 (+) True G117644
TU133681 lncRNA upstream 174629 4401285 ~ 4401498 (+) True G117641
TU133678 lncRNA upstream 182348 4393448 ~ 4393779 (+) True G117638
TU133635 lncRNA upstream 278798 4296745 ~ 4297329 (+) True G117608
TU133448 lncRNA upstream 332049 4242624 ~ 4244078 (+) True G117435
TU134483 lncRNA downstream 13237 4598548 ~ 4598759 (+) True G118374
TU134514 lncRNA downstream 48191 4633502 ~ 4633936 (+) True G118405
TU134518 lncRNA downstream 54616 4639927 ~ 4640220 (+) True G118409
TU134525 lncRNA downstream 76027 4661338 ~ 4661573 (+) True G118416
TU134567 lncRNA downstream 130981 4716292 ~ 4716495 (+) True G118450
CI01000021_04436103_04476829.mRNA mRNA upstream 98816 4435827 ~ 4477311 (+) True CI01000021_04436103_04476829
CI01000021_04259458_04263656.mRNA mRNA upstream 312021 4259157 ~ 4264106 (+) True CI01000021_04259458_04263656
CI01000021_04219242_04237829.mRNA mRNA upstream 338120 4219187 ~ 4238007 (+) True CI01000021_04219242_04237829
CI01000021_04087145_04091630.mRNA mRNA upstream 484301 4085974 ~ 4091826 (+) True CI01000021_04087145_04091630
CI01000021_03793387_03846383.mRNA mRNA upstream 729744 3793387 ~ 3846383 (+) True CI01000021_03793387_03846383
CI01000021_04614553_04621970.mRNA mRNA downstream 28454 4613765 ~ 4622428 (+) True CI01000021_04614553_04621970
CI01000021_04755472_04758504.mRNA mRNA downstream 170161 4755472 ~ 4758654 (+) True CI01000021_04755472_04758504
CI01000021_04763908_04787185.mRNA mRNA downstream 178597 4763908 ~ 4787967 (+) True CI01000021_04763908_04787185
CI01000021_04795987_04803001.mRNA mRNA downstream 210676 4795987 ~ 4803104 (+) True CI01000021_04795987_04803001
CI01000021_04886787_04893309.mRNA mRNA downstream 301026 4886337 ~ 4893474 (+) False CI01000021_04886787_04893309
TU133514 other upstream 540451 4033000 ~ 4035676 (+) True G117493
TU133500 other upstream 618375 3956146 ~ 3957752 (+) True G117484
TU133183 other upstream 1247894 3269144 ~ 3328233 (+) False G117202
TU133182 other upstream 1247894 3324272 ~ 3328233 (+) True G117202
TU133219 other upstream 1332763 3237854 ~ 3243364 (+) True G117237
TU134547 other downstream 257422 4842733 ~ 4886292 (+) True G118432
TU135922 other downstream 2214833 6800144 ~ 6860606 (+) True G119701

Expression Profile