Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU131221 |
| length | 3182 |
| RNA type | TUCP |
| GC content | 0.48 |
| exon number | 2 |
| gene id | G115519 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000021 |
| NCBI id | null |
| chromosome length | 7014339 |
| location | 480530 ~ 483964 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU131230 | lncRNA | upstream | 1138 | 478692 ~ 479392 (+) | True | G115528 |
| TU131254 | lncRNA | upstream | 6171 | 473699 ~ 474359 (+) | True | G115549 |
| TU131252 | lncRNA | upstream | 8050 | 472179 ~ 472480 (+) | True | G115548 |
| TU131156 | lncRNA | upstream | 90356 | 389765 ~ 390174 (+) | True | G115464 |
| TU131138 | lncRNA | upstream | 145826 | 325007 ~ 334704 (+) | True | G115447 |
| TU131220 | lncRNA | downstream | 39907 | 523871 ~ 527659 (+) | True | G115518 |
| TU131278 | lncRNA | downstream | 58876 | 542840 ~ 543072 (+) | True | G115566 |
| TU131281 | lncRNA | downstream | 62356 | 546320 ~ 546582 (+) | True | G115569 |
| TU131293 | lncRNA | downstream | 88764 | 572728 ~ 573126 (+) | True | G115581 |
| TU131313 | lncRNA | downstream | 128025 | 611989 ~ 612386 (+) | True | G115601 |
| CI01000021_00440399_00440684.mRNA | mRNA | upstream | 39574 | 440399 ~ 440956 (+) | True | CI01000021_00440399_00440684 |
| CI01000021_00349073_00352551.mRNA | mRNA | upstream | 127409 | 347775 ~ 353121 (+) | True | CI01000021_00349073_00352551 |
| CI01000021_00336727_00346126.mRNA | mRNA | upstream | 134138 | 336420 ~ 346392 (+) | True | CI01000021_00336727_00346126 |
| CI01000021_00013488_00033205.mRNA | mRNA | upstream | 445625 | 13058 ~ 34905 (+) | True | CI01000021_00013488_00033205 |
| CI01000021_00558429_00561268.mRNA | mRNA | downstream | 73831 | 557795 ~ 562087 (+) | True | CI01000021_00558429_00561268 |
| CI01000021_00591222_00592439.mRNA | mRNA | downstream | 106353 | 590317 ~ 592932 (+) | True | CI01000021_00591222_00592439 |
| CI01000021_00680850_00686621.mRNA | mRNA | downstream | 196886 | 680850 ~ 687286 (+) | True | CI01000021_00680850_00686621 |
| CI01000021_00699356_00722821.mRNA | mRNA | downstream | 215392 | 699356 ~ 722977 (+) | True | CI01000021_00699356_00722821 |
| CI01000021_00748689_00750893.mRNA | mRNA | downstream | 264177 | 748141 ~ 751000 (+) | True | CI01000021_00748689_00750893 |
| TU131419 | other | downstream | 848609 | 1333998 ~ 1334409 (+) | True | G115691 |
| TU132002 | other | downstream | 1805853 | 2289817 ~ 2297195 (+) | True | G116236 |
| TU133219 | other | downstream | 2753890 | 3237854 ~ 3243364 (+) | True | G117237 |
| TU133183 | other | downstream | 2785180 | 3269144 ~ 3328233 (+) | False | G117202 |
| TU133182 | other | downstream | 2840308 | 3324272 ~ 3328233 (+) | True | G117202 |
