RNA id: TU131376



Basic Information


Item Value
RNA id TU131376
length 262
lncRNA type inter_gene
GC content 0.62
exon number 1
gene id G115653
representative True

Chromosome Information


Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 756980 ~ 757241 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CTCGTGTACCTCAGGAAAAAATGGAGCCGCCCGCTGATGAGGAGCCTGGCGACGTCCGGGCAGAAACCATTTGTCGAGGCGGCTGCATGCTGGTTCTTCAGGCGCAGACCACTCCAAGCCGAGCTCTTCAACGGCCTTAGAGAGCACGCGAATGAGCTCGGAGTCGATGGAAGCCCTGGCGTCGATCGGCTCAAGAGACGGCAAGGGGGTGGAGTCAAGGTGTGAGTCCGGCCAATCCTCAGCGTCCGAGGCCGCTAGGGAC

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131313 lncRNA upstream 144594 611989 ~ 612386 (+) True G115601
TU131293 lncRNA upstream 183854 572728 ~ 573126 (+) True G115581
TU131281 lncRNA upstream 210398 546320 ~ 546582 (+) True G115569
TU131278 lncRNA upstream 213908 542840 ~ 543072 (+) True G115566
TU131220 lncRNA upstream 229321 523871 ~ 527659 (+) True G115518
TU131378 lncRNA downstream 1311 758552 ~ 758762 (+) True G115655
TU131384 lncRNA downstream 12242 769483 ~ 786300 (+) True G115660
TU131397 lncRNA downstream 29501 786742 ~ 786958 (+) True G115673
TU131398 lncRNA downstream 30029 787270 ~ 788025 (+) True G115674
TU131427 lncRNA downstream 90998 848239 ~ 852443 (+) True G115699
CI01000021_00748689_00750893.mRNA mRNA upstream 5980 748141 ~ 751000 (+) True CI01000021_00748689_00750893
CI01000021_00699356_00722821.mRNA mRNA upstream 34003 699356 ~ 722977 (+) True CI01000021_00699356_00722821
CI01000021_00680850_00686621.mRNA mRNA upstream 69694 680850 ~ 687286 (+) True CI01000021_00680850_00686621
CI01000021_00591222_00592439.mRNA mRNA upstream 164048 590317 ~ 592932 (+) True CI01000021_00591222_00592439
CI01000021_00558429_00561268.mRNA mRNA upstream 194893 557795 ~ 562087 (+) True CI01000021_00558429_00561268
CI01000021_00822848_00831637.mRNA mRNA downstream 65607 822848 ~ 831680 (+) True CI01000021_00822848_00831637
CI01000021_00972210_01064592.mRNA mRNA downstream 213972 971213 ~ 1064715 (+) True CI01000021_00972210_01064592
CI01000021_01100408_01104630.mRNA mRNA downstream 343167 1100408 ~ 1104630 (+) True CI01000021_01100408_01104630
CI01000021_01129847_01154032.mRNA mRNA downstream 372606 1129847 ~ 1154308 (+) True CI01000021_01129847_01154032
CI01000021_01219723_01256723.mRNA mRNA downstream 462482 1219723 ~ 1257080 (+) True CI01000021_01219723_01256723
TU131221 other upstream 273016 480530 ~ 483964 (+) True G115519
TU131419 other downstream 575332 1333998 ~ 1334409 (+) True G115691
TU132002 other downstream 1532576 2289817 ~ 2297195 (+) True G116236
TU133219 other downstream 2480613 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 2511903 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 2567031 3324272 ~ 3328233 (+) True G117202

Expression Profile