RNA id: TU131397


Basic Information

Item Value
RNA id TU131397
length 217
lncRNA type inter_gene
GC content 0.31
exon number 1
gene id G115673
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 786742 ~ 786958 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CATTTATACAGTGGTGGTCAGAGTTATTGGCACCCTTGGTAAATATGATCAAAGATGACTATAAAAATAAATCTGCATTGTTTATGCTTTTGATCTTTAATTCATAAAATTAGCAAAAATCTAACCTTTCATTGAAGGAAAAGAATTGAAAGTGGGGGGAAAATCACATTATGAAATAAATGTTTTTCTCCAAAACACGTTGGCCACAATTATTGGC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131384 lncRNA upstream 442 769483 ~ 786300 (+) True G115660
TU131378 lncRNA upstream 27980 758552 ~ 758762 (+) True G115655
TU131376 lncRNA upstream 29501 756980 ~ 757241 (+) True G115653
TU131313 lncRNA upstream 174356 611989 ~ 612386 (+) True G115601
TU131293 lncRNA upstream 213616 572728 ~ 573126 (+) True G115581
TU131398 lncRNA downstream 312 787270 ~ 788025 (+) True G115674
TU131427 lncRNA downstream 61281 848239 ~ 852443 (+) True G115699
TU131425 lncRNA downstream 69377 856335 ~ 858020 (+) True G115697
TU131407 lncRNA downstream 80357 867315 ~ 883125 (+) True G115681
TU131444 lncRNA downstream 89817 876775 ~ 877383 (+) True G115716
CI01000021_00748689_00750893.mRNA mRNA upstream 35742 748141 ~ 751000 (+) True CI01000021_00748689_00750893
CI01000021_00699356_00722821.mRNA mRNA upstream 63765 699356 ~ 722977 (+) True CI01000021_00699356_00722821
CI01000021_00680850_00686621.mRNA mRNA upstream 99456 680850 ~ 687286 (+) True CI01000021_00680850_00686621
CI01000021_00591222_00592439.mRNA mRNA upstream 193810 590317 ~ 592932 (+) True CI01000021_00591222_00592439
CI01000021_00558429_00561268.mRNA mRNA upstream 224655 557795 ~ 562087 (+) True CI01000021_00558429_00561268
CI01000021_00822848_00831637.mRNA mRNA downstream 35890 822848 ~ 831680 (+) True CI01000021_00822848_00831637
CI01000021_00972210_01064592.mRNA mRNA downstream 184255 971213 ~ 1064715 (+) True CI01000021_00972210_01064592
CI01000021_01100408_01104630.mRNA mRNA downstream 313450 1100408 ~ 1104630 (+) True CI01000021_01100408_01104630
CI01000021_01129847_01154032.mRNA mRNA downstream 342889 1129847 ~ 1154308 (+) True CI01000021_01129847_01154032
CI01000021_01219723_01256723.mRNA mRNA downstream 432765 1219723 ~ 1257080 (+) True CI01000021_01219723_01256723
TU131221 other upstream 302778 480530 ~ 483964 (+) True G115519
TU131419 other downstream 545615 1333998 ~ 1334409 (+) True G115691
TU132002 other downstream 1502859 2289817 ~ 2297195 (+) True G116236
TU133219 other downstream 2450896 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 2482186 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 2537314 3324272 ~ 3328233 (+) True G117202

Expression Profile