RNA id: TU131449



Basic Information


Item Value
RNA id TU131449
length 432
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G115721
representative True

Chromosome Information


Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 893528 ~ 893959 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CATGCCACACGCACTCATGCAACCCCATACCATCAGAGATGCAGGCTTCTGAACTGAGCGCTGATAACAACTTGGGTTGTCCTTGTCCTCTTTAGTCCGGATGACATGGCGTCCCAGGTTTCCAAAAAGAACTTCAAATTTTGATTCGTCTGACCACAGAACAGTTTTCCACTTTGCCACAGTCCATTTTAAATGAGCCTTGGCCCAGAGAAAACGCCTGCGCTTCTGGATCATGTTTAGATATGGCTTCTTTTTTGACCTATAGAGTTTTAGCCGGCAACGGCGAATGACACGGTGGATTGTGTTCACCGACAATGTTTTCTGGAAGTATTCCTGAGCCCATGTTGTGATTTCCATTACAGTAGCATTCCTGTGTGTGATGCAGTGCCGTCTAAGGGCCCGGAGATCACGGGCATCCAGTATGGTTTTCCG

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131407 lncRNA upstream 10403 867315 ~ 883125 (+) True G115681
TU131444 lncRNA upstream 16145 876775 ~ 877383 (+) True G115716
TU131425 lncRNA upstream 35508 856335 ~ 858020 (+) True G115697
TU131427 lncRNA upstream 41085 848239 ~ 852443 (+) True G115699
TU131398 lncRNA upstream 105503 787270 ~ 788025 (+) True G115674
TU131413 lncRNA downstream 216496 1110455 ~ 1115336 (+) True G115685
TU131478 lncRNA downstream 287765 1181724 ~ 1181948 (+) True G115750
TU131482 lncRNA downstream 290710 1184669 ~ 1184936 (+) True G115754
TU131487 lncRNA downstream 295523 1189482 ~ 1189711 (+) True G115759
TU131412 lncRNA downstream 417868 1311827 ~ 1316148 (+) True G115684
CI01000021_00822848_00831637.mRNA mRNA upstream 61848 822848 ~ 831680 (+) True CI01000021_00822848_00831637
CI01000021_00748689_00750893.mRNA mRNA upstream 142528 748141 ~ 751000 (+) True CI01000021_00748689_00750893
CI01000021_00699356_00722821.mRNA mRNA upstream 170551 699356 ~ 722977 (+) True CI01000021_00699356_00722821
CI01000021_00680850_00686621.mRNA mRNA upstream 206242 680850 ~ 687286 (+) True CI01000021_00680850_00686621
CI01000021_00591222_00592439.mRNA mRNA upstream 300596 590317 ~ 592932 (+) True CI01000021_00591222_00592439
CI01000021_00972210_01064592.mRNA mRNA downstream 77254 971213 ~ 1064715 (+) True CI01000021_00972210_01064592
CI01000021_01100408_01104630.mRNA mRNA downstream 206449 1100408 ~ 1104630 (+) True CI01000021_01100408_01104630
CI01000021_01129847_01154032.mRNA mRNA downstream 235888 1129847 ~ 1154308 (+) True CI01000021_01129847_01154032
CI01000021_01219723_01256723.mRNA mRNA downstream 325764 1219723 ~ 1257080 (+) True CI01000021_01219723_01256723
CI01000021_01264188_01268643.mRNA mRNA downstream 368479 1262438 ~ 1268865 (+) True CI01000021_01264188_01268643
TU131221 other upstream 409564 480530 ~ 483964 (+) True G115519
TU131419 other downstream 438614 1333998 ~ 1334409 (+) True G115691
TU132002 other downstream 1395858 2289817 ~ 2297195 (+) True G116236
TU133219 other downstream 2343895 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 2375185 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 2430313 3324272 ~ 3328233 (+) True G117202

Expression Profile