RNA id: TU131524



Basic Information


Item Value
RNA id TU131524
length 1174
lncRNA type intronic
GC content 0.48
exon number 2
gene id G115791
representative True

Chromosome Information


Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1384939 ~ 1386229 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence


CGCCCTGACTCCTGCGCCTGCGCTCCTTCCGCCCTCGACCTCGGAGTGGACCATCGGCCTTTCAGCCACGCCGGACTCCCTCAGCACGTCGGCTCCACCTGGGTCAGACATCGCTTCGCCTCCGCTGCGGACTTACGGACCATCCGCTGCTCTCTGGTCCTCCACCCCTTCCACTACGGCTTGCTCCGCCCTACCTCAGGCTCCGTCTCCGCCCTCGGTTGCTCCAATGCGTCCTCAGACCTCTGGATCCCCTCCTTGATCTCGTCGTCACTGCGGCTTCGTCGCGGTCACCAGGATCTTCACCATCTCTCCACCTCCTCAGCTCGTCGGCTGCGCGGTGGGCTCCATCCTCGCCGTCGTTGCCTGCGGCCATCACCTGGATGTCACCACCCTTGGCCGTCCACCTCCTGAACCACCTCCTGCATCTGCCCGTTTCACCATCACATCATCCACCTCCAGAACCCCCTCCGGCCCTCCCCTTTGATGTTTCTCTACGGTGCAAGGATGCGCCTCGCCGGAGGGGGATGTACTGTCACAGTCACGTCATGTTCTGTTTGTTTTGGTTTTTATTCTGTCACGTGCTCCTTTGTTCTGTTTTCCCGCCACAATCAGTCACCATAGACACTCATCACATTCATCACAGCTATTTGTCATTTTAGTTAATTCGTCATTGTATATAAGTTCCTGTTTATCTTCAGTTCATTGTCAGGTCTTGTTTAACGTTTGACGTTTATACTTCTGTTGTGTGATGTTCCTGCCTGTATTCTGTATTCTCCCATTGGATATTCAAGTAAAGACTTATTTAACTATTATCTTCCTGGTTGTGTGTTTGATACACCACCAGACTGTAACATTATTATCACACAAATCTAATTTTAACATGTATAACATTTCATATATAATGCTGGTATGCCATGCCTTCCCCTTACTTTAACACTATGTTTTATTATTTGAGGAATGATGAGATATTATTTTCTGTAGCTTTTTATTGATAGGGCTTTAATTTCATTGCAATCATTACTTTAATTTCTGTAATATCTTTTTCTGTTTTTCCTTTGTCCATCTTTGGTATCTACTGTTACTTTGCCATCTTCTTCTGAGAGTAACACACACAAATGATGGTCAGATGGATTCAGGATGCCATCTTTAATTCCTCATGGATAATGCAGTTTCA

Function


GO: NA

KEGG: NA

JBrowse2


Neighbor


RNA id RNA type direction distance location representative gene id
TU131412 lncRNA upstream 68791 1311827 ~ 1316148 (+) True G115684
TU131487 lncRNA upstream 195228 1189482 ~ 1189711 (+) True G115759
TU131482 lncRNA upstream 200003 1184669 ~ 1184936 (+) True G115754
TU131478 lncRNA upstream 202991 1181724 ~ 1181948 (+) True G115750
TU131413 lncRNA upstream 269603 1110455 ~ 1115336 (+) True G115685
TU131513 lncRNA downstream 21974 1408203 ~ 1408451 (+) True G115780
TU131550 lncRNA downstream 24098 1410327 ~ 1410607 (+) True G115817
TU131558 lncRNA downstream 40246 1426475 ~ 1426764 (+) True G115824
TU131607 lncRNA downstream 57026 1443255 ~ 1450354 (+) True G115856
TU131575 lncRNA downstream 110207 1496436 ~ 1506142 (+) True G115836
CI01000021_01332646_01333910.mRNA mRNA upstream 50988 1331665 ~ 1333951 (+) False CI01000021_01332646_01333910
CI01000021_01288735_01291953.mRNA mRNA upstream 92977 1288596 ~ 1291962 (+) True CI01000021_01288735_01291953
CI01000021_01274202_01280110.mRNA mRNA upstream 103180 1273594 ~ 1281759 (+) True CI01000021_01274202_01280110
CI01000021_01264188_01268643.mRNA mRNA upstream 116074 1262438 ~ 1268865 (+) True CI01000021_01264188_01268643
CI01000021_01219723_01256723.mRNA mRNA upstream 127859 1219723 ~ 1257080 (+) True CI01000021_01219723_01256723
CI01000021_01463736_01472529.mRNA mRNA downstream 77507 1463736 ~ 1472886 (+) True CI01000021_01463736_01472529
CI01000021_01506852_01513139.mRNA mRNA downstream 119987 1506216 ~ 1513306 (+) True CI01000021_01506852_01513139
CI01000021_01519982_01528860.mRNA mRNA downstream 133753 1519982 ~ 1529105 (+) True CI01000021_01519982_01528860
CI01000021_01717640_01718394.mRNA mRNA downstream 331411 1717640 ~ 1718879 (+) True CI01000021_01717640_01718394
CI01000021_01771612_01785627.mRNA mRNA downstream 385160 1771389 ~ 1785666 (+) True CI01000021_01771612_01785627
TU131419 other upstream 50530 1333998 ~ 1334409 (+) True G115691
TU131221 other upstream 900975 480530 ~ 483964 (+) True G115519
TU132002 other downstream 903588 2289817 ~ 2297195 (+) True G116236
TU133219 other downstream 1851625 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 1882915 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 1938043 3324272 ~ 3328233 (+) True G117202
TU133500 other downstream 2569917 3956146 ~ 3957752 (+) True G117484

Expression Profile