RNA id: TU131623


Basic Information

Item Value
RNA id TU131623
length 262
lncRNA type inter_gene
GC content 0.46
exon number 1
gene id G115870
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1516681 ~ 1516942 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCAGGTCTATCATCTCTACTCACACACCAATCGTCATCAGCACGTGTCCCACCCCAACACACACCAGAGAAAAACTTTGCAGGTCCTATGGCTGAGAGGGAGCATACTCGGATGAAAACCGCTTCAGTGAGCTCAATTATAGTAACGCGGCACTTTTTTGTCAGTAACGGTAACGGCGTTGTAACGGGGGAAAAAGTAATTCATTTGATTACTCGTTACTGAGAAAGGTAACGTCGTTATTCCCATCACTGTAATCTCTCTC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131575 lncRNA upstream 10539 1496436 ~ 1506142 (+) True G115836
TU131607 lncRNA upstream 66327 1443255 ~ 1450354 (+) True G115856
TU131558 lncRNA upstream 89917 1426475 ~ 1426764 (+) True G115824
TU131550 lncRNA upstream 106074 1410327 ~ 1410607 (+) True G115817
TU131513 lncRNA upstream 108230 1408203 ~ 1408451 (+) True G115780
TU131699 lncRNA downstream 128657 1645599 ~ 1645878 (+) True G115941
TU131717 lncRNA downstream 155528 1672470 ~ 1672810 (+) True G115959
TU131727 lncRNA downstream 253030 1769972 ~ 1770203 (+) True G115968
TU131728 lncRNA downstream 284216 1801158 ~ 1802398 (+) True G115969
TU131729 lncRNA downstream 285470 1802412 ~ 1803161 (+) True G115970
CI01000021_01506852_01513139.mRNA mRNA upstream 3375 1506216 ~ 1513306 (+) True CI01000021_01506852_01513139
CI01000021_01463736_01472529.mRNA mRNA upstream 43795 1463736 ~ 1472886 (+) True CI01000021_01463736_01472529
CI01000021_01332646_01333910.mRNA mRNA upstream 182730 1331665 ~ 1333951 (+) False CI01000021_01332646_01333910
CI01000021_01288735_01291953.mRNA mRNA upstream 224719 1288596 ~ 1291962 (+) True CI01000021_01288735_01291953
CI01000021_01274202_01280110.mRNA mRNA upstream 234922 1273594 ~ 1281759 (+) True CI01000021_01274202_01280110
CI01000021_01519982_01528860.mRNA mRNA downstream 3040 1519982 ~ 1529105 (+) True CI01000021_01519982_01528860
CI01000021_01717640_01718394.mRNA mRNA downstream 200698 1717640 ~ 1718879 (+) True CI01000021_01717640_01718394
CI01000021_01771612_01785627.mRNA mRNA downstream 254447 1771389 ~ 1785666 (+) True CI01000021_01771612_01785627
CI01000021_01977248_01980449.mRNA mRNA downstream 459997 1976939 ~ 1980506 (+) True CI01000021_01977248_01980449
CI01000021_02230472_02252713.mRNA mRNA downstream 713049 2229991 ~ 2253146 (+) True CI01000021_02230472_02252713
TU131419 other upstream 182272 1333998 ~ 1334409 (+) True G115691
TU131221 other upstream 1032717 480530 ~ 483964 (+) True G115519
TU132002 other downstream 772875 2289817 ~ 2297195 (+) True G116236
TU133219 other downstream 1720912 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 1752202 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 1807330 3324272 ~ 3328233 (+) True G117202
TU133500 other downstream 2439204 3956146 ~ 3957752 (+) True G117484

Expression Profile