RNA id: TU131727


Basic Information

Item Value
RNA id TU131727
length 232
lncRNA type inter_gene
GC content 0.32
exon number 1
gene id G115968
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1769972 ~ 1770203 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGTTAATCTTCGGAACGCAAATTAAGATATTTTTGTTGAAATCCGATGGCTCAGTGAGGCCTGCATAGCCAGCAATGACATTTCCTCTCTCAAGATCCATTAATGTACTTAAAACATATTTAAATCAGTTCATGTGAGTACAGTGGTTCAATATTAATATTATAAAGCGACCAGAATATTTTTGGTGCGCCAAAAAAAATAATAATAATAAAATAACGACTTATAGTGATAT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131717 lncRNA upstream 97162 1672470 ~ 1672810 (+) True G115959
TU131699 lncRNA upstream 124094 1645599 ~ 1645878 (+) True G115941
TU131623 lncRNA upstream 253030 1516681 ~ 1516942 (+) True G115870
TU131575 lncRNA upstream 263830 1496436 ~ 1506142 (+) True G115836
TU131607 lncRNA upstream 319618 1443255 ~ 1450354 (+) True G115856
TU131728 lncRNA downstream 30955 1801158 ~ 1802398 (+) True G115969
TU131729 lncRNA downstream 32209 1802412 ~ 1803161 (+) True G115970
TU131735 lncRNA downstream 40680 1810883 ~ 1811363 (+) True G115973
TU131577 lncRNA downstream 41743 1811946 ~ 1876510 (+) True G115837
TU131738 lncRNA downstream 44495 1814698 ~ 1814987 (+) True G115976
CI01000021_01717640_01718394.mRNA mRNA upstream 51093 1717640 ~ 1718879 (+) True CI01000021_01717640_01718394
CI01000021_01519982_01528860.mRNA mRNA upstream 240867 1519982 ~ 1529105 (+) True CI01000021_01519982_01528860
CI01000021_01506852_01513139.mRNA mRNA upstream 256666 1506216 ~ 1513306 (+) True CI01000021_01506852_01513139
CI01000021_01463736_01472529.mRNA mRNA upstream 297086 1463736 ~ 1472886 (+) True CI01000021_01463736_01472529
CI01000021_01332646_01333910.mRNA mRNA upstream 436021 1331665 ~ 1333951 (+) False CI01000021_01332646_01333910
CI01000021_01771612_01785627.mRNA mRNA downstream 1186 1771389 ~ 1785666 (+) True CI01000021_01771612_01785627
CI01000021_01977248_01980449.mRNA mRNA downstream 206736 1976939 ~ 1980506 (+) True CI01000021_01977248_01980449
CI01000021_02230472_02252713.mRNA mRNA downstream 459788 2229991 ~ 2253146 (+) True CI01000021_02230472_02252713
CI01000021_02269000_02272309.mRNA mRNA downstream 498486 2268689 ~ 2272396 (+) True CI01000021_02269000_02272309
CI01000021_02322467_02328819.mRNA mRNA downstream 552264 2322467 ~ 2329864 (+) True CI01000021_02322467_02328819
TU131419 other upstream 435563 1333998 ~ 1334409 (+) True G115691
TU131221 other upstream 1286008 480530 ~ 483964 (+) True G115519
TU132002 other downstream 519614 2289817 ~ 2297195 (+) True G116236
TU133219 other downstream 1467651 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 1498941 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 1554069 3324272 ~ 3328233 (+) True G117202
TU133500 other downstream 2185943 3956146 ~ 3957752 (+) True G117484

Expression Profile