Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU131728 |
| length | 939 |
| lncRNA type | inter_gene |
| GC content | 0.43 |
| exon number | 2 |
| gene id | G115969 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000021 |
| NCBI id | null |
| chromosome length | 7014339 |
| location | 1801158 ~ 1802398 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU131727 | lncRNA | upstream | 30955 | 1769972 ~ 1770203 (+) | True | G115968 |
| TU131717 | lncRNA | upstream | 128348 | 1672470 ~ 1672810 (+) | True | G115959 |
| TU131699 | lncRNA | upstream | 155280 | 1645599 ~ 1645878 (+) | True | G115941 |
| TU131623 | lncRNA | upstream | 284216 | 1516681 ~ 1516942 (+) | True | G115870 |
| TU131575 | lncRNA | upstream | 295016 | 1496436 ~ 1506142 (+) | True | G115836 |
| TU131729 | lncRNA | downstream | 14 | 1802412 ~ 1803161 (+) | True | G115970 |
| TU131735 | lncRNA | downstream | 8485 | 1810883 ~ 1811363 (+) | True | G115973 |
| TU131577 | lncRNA | downstream | 9548 | 1811946 ~ 1876510 (+) | True | G115837 |
| TU131738 | lncRNA | downstream | 12300 | 1814698 ~ 1814987 (+) | True | G115976 |
| TU131592 | lncRNA | downstream | 84151 | 1886549 ~ 1888740 (+) | True | G115845 |
| CI01000021_01771612_01785627.mRNA | mRNA | upstream | 15492 | 1771389 ~ 1785666 (+) | True | CI01000021_01771612_01785627 |
| CI01000021_01717640_01718394.mRNA | mRNA | upstream | 82279 | 1717640 ~ 1718879 (+) | True | CI01000021_01717640_01718394 |
| CI01000021_01519982_01528860.mRNA | mRNA | upstream | 272053 | 1519982 ~ 1529105 (+) | True | CI01000021_01519982_01528860 |
| CI01000021_01506852_01513139.mRNA | mRNA | upstream | 287852 | 1506216 ~ 1513306 (+) | True | CI01000021_01506852_01513139 |
| CI01000021_01463736_01472529.mRNA | mRNA | upstream | 328272 | 1463736 ~ 1472886 (+) | True | CI01000021_01463736_01472529 |
| CI01000021_01977248_01980449.mRNA | mRNA | downstream | 174541 | 1976939 ~ 1980506 (+) | True | CI01000021_01977248_01980449 |
| CI01000021_02230472_02252713.mRNA | mRNA | downstream | 427593 | 2229991 ~ 2253146 (+) | True | CI01000021_02230472_02252713 |
| CI01000021_02269000_02272309.mRNA | mRNA | downstream | 466291 | 2268689 ~ 2272396 (+) | True | CI01000021_02269000_02272309 |
| CI01000021_02322467_02328819.mRNA | mRNA | downstream | 520069 | 2322467 ~ 2329864 (+) | True | CI01000021_02322467_02328819 |
| CI01000021_02331361_02334546.mRNA | mRNA | downstream | 528752 | 2331150 ~ 2334622 (+) | True | CI01000021_02331361_02334546 |
| TU131419 | other | upstream | 466749 | 1333998 ~ 1334409 (+) | True | G115691 |
| TU131221 | other | upstream | 1317194 | 480530 ~ 483964 (+) | True | G115519 |
| TU132002 | other | downstream | 487419 | 2289817 ~ 2297195 (+) | True | G116236 |
| TU133219 | other | downstream | 1435456 | 3237854 ~ 3243364 (+) | True | G117237 |
| TU133183 | other | downstream | 1466746 | 3269144 ~ 3328233 (+) | False | G117202 |
| TU133182 | other | downstream | 1521874 | 3324272 ~ 3328233 (+) | True | G117202 |
| TU133500 | other | downstream | 2153748 | 3956146 ~ 3957752 (+) | True | G117484 |
