RNA id: TU131577


Basic Information

Item Value
RNA id TU131577
length 2759
lncRNA type antisense_over
GC content 0.32
exon number 2
gene id G115837
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 1811946 ~ 1876510 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CAGAAGATGAACGAAGGTCTTACAGGTGTGAAACGACATGAGGGTGAGTAATTAATGACAGAAATTTCATTTTTGGGTGAACTAACCCTTTAAGTGAAACTTGGTCAAACCAATTTCAGAACAACTGTCCAAAACACAAACATATCAAAGTTTACAAGGTGTTTAGTGAGTGTCTCATAGAGATGGGCTTTAATCGTCTTTAAACTTCTAAAATCAACATTTCAAACATCTAGGGTATGAAAATGCACTGTTTTTTTGCGATGCATCACATTCAGCAATGAAAATGGCATTCATTGATTATCGACTTTAATAGTTGATAATTACTGTAATAAATCACAAAGTTCATTCAATATTTTTTTTAATTTTTTTTATCTAACATTCATTCTGTGAATGCTGGTCTTGTTTTATACTCAGTAATCAATAATCAGCAAATTCTTCTTTCTTTTTCTCTTTTTCAATTTATGAAATTATTGACTATTTAATTAGTCAGTAGTATCATAAATTGTACAAATTCATTGAACTGAACTAACCAAATTTCAGAATCACTTTATTTCAAGAAAAATAATGACCAAATTTCAGAATCACTTATAATAATGAAGTCAGTAATGGAGTCAGAGCAAGTTGTACACCTCTAAAATCAAGATGTTTTGAATTACATTCAGTGAGTTTGTTTCCTAATGGGGGGCTGTGTTTCTTACTTAGAAGCACAAAAATAGACTTACAAAAAGGTCAACCGATCTCAGGATTAGATTAGTAATTATGGAGGAGGAATGTGACTAATCACGTCAAAATGTGAGCATTTTCAAATGAGTCTGGCCACTTTCGATCACGTTCCTCACACTCTCAAAACACCTTATCACTAATAACTGTTGCTAGTGTTGAATGTGTCAGACAGAAACAGTCTCTGGACGGTCAAATCAAGAGCTTAGCAGGGGTGCACTAGCGTTCAAAAGTTCAGGTTTCACTATGATTTTTTTTTTTTTAAAGTAATACTTTCATTAAGCAAAGATTAATTCATCAAAAGTGACAAAATAAAAAAAAGTGACATATATAATATTAGACTTATTTCAAATAAATTGTTTTGAACTTTCTATTCAAAGAATCCTGAAAAAAAAAAAATGCATCATGGTTTCACACAAAAATATTAAGCAGCATAACTGTTTTCAACATTGATAATAATAAAGTTTCTTGAGCATTAAACCATCATATTAGAATGATTTCTGACTGATCATGTGACAGTGAAGACTGGAGTAATGATGCTGAAAATTCAGCTTTGATCACAGGAATAAATTATATTTTTAAATATATTAAAATAGAAATTTATTATTATTATTATTAATTATTTATTTTAAATTGAAATTATAGAACACAATATTGTTTCTGCTGTATGTTTGATCAAATAAATGCAGCCTTGATGAACATGAGACTTCCTTCAACAATATTAAAACCTTAAACATTATAGTCTTACCAATTCCAAACATTTGAAAGGAGTGCGCTTCAGGATGAATGAGCCTGTTCGGTTAATTATTATTATTGGTAAAAAATGGCAAACAAAGCCTAAAATATTGATGCTGTTGACAGGCTCTATTTGAAAACCACAGTTTACATTAATACCACTTGCATATTGGTGTTGAACTCCTAAAAGTGAATGCATATGAAAATATCTGTAGGAGCTTATTGAAATTAGAGTGCATTTTATTTTCCAGGTATGTCAGGTGTGATTTGCATTACTGTACATAAAAAATTAATAACCATCTATATTGTTTAACAAGGCATAGGCTTGTAAGAGAACTTTCGGGATTCTTTATAGACTTGCCAAGAACTGTGGAAACAAACCATTACTTTTGCATCACACTTCACCTTTAAATACCATCACACTTGAGGTAATACAGGAATAAAGTTTCCATGCTATGCAAACCATTGTGCAGTCAAGGATCTTTTAGGGCACAAAAGATATTAAACCTGAAGATCAGAGAAGAAAAAAAAAAAAAAAAACGTGAATAAGCAATTGGTTGGGTTATTTACAAGATTACTTGACTTTTAAGTACAAATATAGAAGTAAAATGCAAGTATTTTCAGATTAAAATATATCTTCATATTATAGTCATATTTAACATTTTTCTTTAACTACAGCAAAATACCATTCGAGTCCTTAAGCTCTTTACCCAGAGTAAAGACGTCGAAGAAGTCCAAAATGACCACTTATGAATTAACACAAAATGATTATTTAGCATGTCAAGGATACAGAGGAAATTACTTAATAAAAAAAAAAAAAAAAAAAAAAAAACAGACACAGCTAAGTGCTACAATGAAGCATTAAATTCCACAAATACAAAAAACAAAACAAAAAACAGAATAAACAAAAACTGTTGTTTGCATCAGATATCGTTAGCCTCGATTTTCATCAGTCTTTTCTAACCGGTGACTACTGTTAAACTGCTGACCACACCAGTCACTCCAACATGCATGTGCCACAGAAACTGTCACATTAATATTAGCTTGATTAATTTAGGGGTTTTCTCTCAAAAACCAGGCACACGTAATCATTTAAGCAGTTTCTTGCCAGACTTTAAGGGACTCCATTGTGCATTTAATTTAGTTTTAGCCATTTGTATGTTCTCTGGCGCCCTCAAGAGGATGAGGAGCAGAGTGCGATCTGCTGGACTGTTCCCAGGTCAGTCAGGAGCTGTCTGATGCGATGTTTCAGCTGAGGGAGGCGCGCCAGCGGATCCGGAGGTTCCAGCTCACCTGTGTAGTCT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131735 lncRNA upstream 583 1810883 ~ 1811363 (+) True G115973
TU131729 lncRNA upstream 8785 1802412 ~ 1803161 (+) True G115970
TU131728 lncRNA upstream 9548 1801158 ~ 1802398 (+) True G115969
TU131727 lncRNA upstream 41743 1769972 ~ 1770203 (+) True G115968
TU131717 lncRNA upstream 139136 1672470 ~ 1672810 (+) True G115959
TU131592 lncRNA downstream 10039 1886549 ~ 1888740 (+) True G115845
TU131781 lncRNA downstream 28468 1904978 ~ 1905281 (+) True G116019
TU131571 lncRNA downstream 81659 1958169 ~ 2001464 (+) True G115835
TU131588 lncRNA downstream 134520 2011030 ~ 2013047 (+) False G115844
TU131589 lncRNA downstream 134520 2011030 ~ 2013047 (+) True G115844
CI01000021_01771612_01785627.mRNA mRNA upstream 26280 1771389 ~ 1785666 (+) True CI01000021_01771612_01785627
CI01000021_01717640_01718394.mRNA mRNA upstream 93067 1717640 ~ 1718879 (+) True CI01000021_01717640_01718394
CI01000021_01519982_01528860.mRNA mRNA upstream 282841 1519982 ~ 1529105 (+) True CI01000021_01519982_01528860
CI01000021_01506852_01513139.mRNA mRNA upstream 298640 1506216 ~ 1513306 (+) True CI01000021_01506852_01513139
CI01000021_01463736_01472529.mRNA mRNA upstream 339060 1463736 ~ 1472886 (+) True CI01000021_01463736_01472529
CI01000021_01977248_01980449.mRNA mRNA downstream 100429 1976939 ~ 1980506 (+) True CI01000021_01977248_01980449
CI01000021_02230472_02252713.mRNA mRNA downstream 353481 2229991 ~ 2253146 (+) True CI01000021_02230472_02252713
CI01000021_02269000_02272309.mRNA mRNA downstream 392179 2268689 ~ 2272396 (+) True CI01000021_02269000_02272309
CI01000021_02322467_02328819.mRNA mRNA downstream 445957 2322467 ~ 2329864 (+) True CI01000021_02322467_02328819
CI01000021_02331361_02334546.mRNA mRNA downstream 454640 2331150 ~ 2334622 (+) True CI01000021_02331361_02334546
TU131419 other upstream 477537 1333998 ~ 1334409 (+) True G115691
TU131221 other upstream 1327982 480530 ~ 483964 (+) True G115519
TU132002 other downstream 413307 2289817 ~ 2297195 (+) True G116236
TU133219 other downstream 1361344 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 1392634 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 1447762 3324272 ~ 3328233 (+) True G117202
TU133500 other downstream 2079636 3956146 ~ 3957752 (+) True G117484

Expression Profile