RNA id: TU131982


Basic Information

Item Value
RNA id TU131982
length 265
lncRNA type intronic
GC content 0.49
exon number 1
gene id G116216
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2248266 ~ 2248530 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCTCAGCTCATGTTTGCCTCCTCTCTTGTCAGGGTTTCTTCTGGTCTGGGGCCTGCCTTCTGCATTAGGCTAAGAATGCGAGTAGCAGGTCCTGCGGCCTCCTCTCCTTTGTTCAGGTTGTTCTTTTACTCCATTGCTACTGAATTTTAGAATGTTTGAATATGTGTCTCCCTGGTGGTGTTTAGCATTTAGCATAGTGACAAGCGGTGAGCTTTTGTTATTAGCCTCCCTGTGGTCGCTTAAGCATTGTAGGCCTCCTCTCGC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131950 lncRNA upstream 37563 2210464 ~ 2210703 (+) True G116185
TU131932 lncRNA upstream 68714 2179160 ~ 2179552 (+) True G116167
TU131928 lncRNA upstream 72281 2175781 ~ 2175985 (+) True G116163
TU131588 lncRNA upstream 235219 2011030 ~ 2013047 (+) False G115844
TU131589 lncRNA upstream 235219 2011030 ~ 2013047 (+) True G115844
TU131983 lncRNA downstream 2454 2250984 ~ 2251285 (+) True G116217
TU131997 lncRNA downstream 36846 2285376 ~ 2285643 (+) True G116231
TU132011 lncRNA downstream 48805 2297335 ~ 2297567 (+) True G116245
TU132012 lncRNA downstream 57870 2306400 ~ 2306639 (+) True G116246
TU132047 lncRNA downstream 102991 2351521 ~ 2351780 (+) True G116253
CI01000021_01977248_01980449.mRNA mRNA upstream 267760 1976939 ~ 1980506 (+) True CI01000021_01977248_01980449
CI01000021_01771612_01785627.mRNA mRNA upstream 462600 1771389 ~ 1785666 (+) True CI01000021_01771612_01785627
CI01000021_01717640_01718394.mRNA mRNA upstream 529387 1717640 ~ 1718879 (+) True CI01000021_01717640_01718394
CI01000021_01519982_01528860.mRNA mRNA upstream 719161 1519982 ~ 1529105 (+) True CI01000021_01519982_01528860
CI01000021_01506852_01513139.mRNA mRNA upstream 734960 1506216 ~ 1513306 (+) True CI01000021_01506852_01513139
CI01000021_02269000_02272309.mRNA mRNA downstream 20159 2268689 ~ 2272396 (+) True CI01000021_02269000_02272309
CI01000021_02322467_02328819.mRNA mRNA downstream 73937 2322467 ~ 2329864 (+) True CI01000021_02322467_02328819
CI01000021_02331361_02334546.mRNA mRNA downstream 82620 2331150 ~ 2334622 (+) True CI01000021_02331361_02334546
CI01000021_02346223_02369457.mRNA mRNA downstream 97475 2346005 ~ 2371089 (+) True CI01000021_02346223_02369457
CI01000021_02378299_02383589.mRNA mRNA downstream 129514 2378044 ~ 2383760 (+) True CI01000021_02378299_02383589
TU131419 other upstream 913857 1333998 ~ 1334409 (+) True G115691
TU131221 other upstream 1764302 480530 ~ 483964 (+) True G115519
TU132002 other downstream 41287 2289817 ~ 2297195 (+) True G116236
TU133219 other downstream 989324 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 1020614 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 1075742 3324272 ~ 3328233 (+) True G117202
TU133500 other downstream 1707616 3956146 ~ 3957752 (+) True G117484

Expression Profile