RNA id: TU132011


Basic Information

Item Value
RNA id TU132011
length 233
lncRNA type inter_gene
GC content 0.27
exon number 1
gene id G116245
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2297335 ~ 2297567 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GGGAACACAGTTTAAATGATCTCAACATGATTAGTTAGAAAAAAAAACATCTTAAATTTTATATTTATCATAAGGGTCTGATCAGTTTCATAGTCTGTTAAGACTTTCTGAAGCTGATCATTTCATACTAAACCTCATTCATCAATAAATTATATTCTTATTCTCATTTTGTACAGATACTTTAATACAATGTGCATTTTGGTCATCTGAAAAAAAAAGAAGATAATGGTAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU131997 lncRNA upstream 11692 2285376 ~ 2285643 (+) True G116231
TU131983 lncRNA upstream 46050 2250984 ~ 2251285 (+) True G116217
TU131982 lncRNA upstream 48805 2248266 ~ 2248530 (+) True G116216
TU131950 lncRNA upstream 86632 2210464 ~ 2210703 (+) True G116185
TU131932 lncRNA upstream 117783 2179160 ~ 2179552 (+) True G116167
TU132012 lncRNA downstream 8833 2306400 ~ 2306639 (+) True G116246
TU132047 lncRNA downstream 53954 2351521 ~ 2351780 (+) True G116253
TU132009 lncRNA downstream 107690 2405257 ~ 2408394 (+) True G116243
TU132137 lncRNA downstream 237521 2535088 ~ 2535564 (+) True G116320
TU132141 lncRNA downstream 242547 2540114 ~ 2540328 (+) True G116324
CI01000021_02269000_02272309.mRNA mRNA upstream 24939 2268689 ~ 2272396 (+) True CI01000021_02269000_02272309
CI01000021_02230472_02252713.mRNA mRNA upstream 44189 2229991 ~ 2253146 (+) True CI01000021_02230472_02252713
CI01000021_01977248_01980449.mRNA mRNA upstream 316829 1976939 ~ 1980506 (+) True CI01000021_01977248_01980449
CI01000021_01771612_01785627.mRNA mRNA upstream 511669 1771389 ~ 1785666 (+) True CI01000021_01771612_01785627
CI01000021_01717640_01718394.mRNA mRNA upstream 578456 1717640 ~ 1718879 (+) True CI01000021_01717640_01718394
CI01000021_02322467_02328819.mRNA mRNA downstream 24900 2322467 ~ 2329864 (+) True CI01000021_02322467_02328819
CI01000021_02331361_02334546.mRNA mRNA downstream 33583 2331150 ~ 2334622 (+) True CI01000021_02331361_02334546
CI01000021_02346223_02369457.mRNA mRNA downstream 48438 2346005 ~ 2371089 (+) True CI01000021_02346223_02369457
CI01000021_02378299_02383589.mRNA mRNA downstream 80477 2378044 ~ 2383760 (+) True CI01000021_02378299_02383589
CI01000021_02402058_02447882.mRNA mRNA downstream 104112 2401679 ~ 2447882 (+) True CI01000021_02402058_02447882
TU132002 other upstream 140 2289817 ~ 2297195 (+) True G116236
TU131419 other upstream 962926 1333998 ~ 1334409 (+) True G115691
TU131221 other upstream 1813371 480530 ~ 483964 (+) True G115519
TU133219 other downstream 940287 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 971577 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 1026705 3324272 ~ 3328233 (+) True G117202
TU133500 other downstream 1658579 3956146 ~ 3957752 (+) True G117484
TU133514 other downstream 1735433 4033000 ~ 4035676 (+) True G117493

Expression Profile