RNA id: TU132094


Basic Information

Item Value
RNA id TU132094
length 458
lncRNA type inter_gene
GC content 0.35
exon number 2
gene id G116277
representative True

Chromosome Information

Item Value
chromosome id CI01000021
NCBI id null
chromosome length 7014339
location 2543205 ~ 2579519 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATTTGTGTTCTGAAGATGAACGAAGGTCTTATGTGTGTGGAACAACATGAGGGTGAGTAATTAATGACAAAAATTTTGGGGTGAACCCTTTAATGAGAGAGTCATCGAGTTATTCATTCATTCAGTAACGAAGGAAGTGGCTGTATTTATGAATGGGTCATTGAATCATTGACTCTCCCGATTTGTTCAAAGCCACATATTAGTTCAATAACGAAACACCACTCTGCTGCTGCTTTCATTGGAACTATTATTTCTTTTCAAAATAGAGCAAACAATACTGACAATACTGTGTTATCTATGTACATCACTTAATATTACCTTTTTGTTTGTTGAACTGTTAATATATTATCAACATTAAAAACAAGAACCCACACAGGGTATGTTTTTCTATCGAAGGGAGTTTGAGTCTTATTGATCTCTATGCACACAGTCTGTGTCGTAAAACATTTTCAGCTGGT

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU132141 lncRNA upstream 2877 2540114 ~ 2540328 (+) True G116324
TU132137 lncRNA upstream 7641 2535088 ~ 2535564 (+) True G116320
TU132009 lncRNA upstream 134811 2405257 ~ 2408394 (+) True G116243
TU132047 lncRNA upstream 191425 2351521 ~ 2351780 (+) True G116253
TU132012 lncRNA upstream 236566 2306400 ~ 2306639 (+) True G116246
TU133017 lncRNA downstream 232964 2812483 ~ 2816693 (+) True G117073
TU132970 lncRNA downstream 238942 2818461 ~ 2839917 (+) True G117031
TU133020 lncRNA downstream 241070 2820589 ~ 2865155 (+) True G117075
TU133096 lncRNA downstream 288292 2867811 ~ 2868128 (+) True G117137
TU133097 lncRNA downstream 290436 2869955 ~ 2870327 (+) True G117138
CI01000021_02495559_02501217.mRNA mRNA upstream 41478 2495559 ~ 2501727 (+) True CI01000021_02495559_02501217
CI01000021_02402058_02447882.mRNA mRNA upstream 95323 2401679 ~ 2447882 (+) True CI01000021_02402058_02447882
CI01000021_02378299_02383589.mRNA mRNA upstream 159445 2378044 ~ 2383760 (+) True CI01000021_02378299_02383589
CI01000021_02346223_02369457.mRNA mRNA upstream 172116 2346005 ~ 2371089 (+) True CI01000021_02346223_02369457
CI01000021_02331361_02334546.mRNA mRNA upstream 208583 2331150 ~ 2334622 (+) True CI01000021_02331361_02334546
CI01000021_02581650_02610697.mRNA mRNA downstream 2131 2581650 ~ 2611607 (+) True CI01000021_02581650_02610697
CI01000021_02877008_02877864.mRNA mRNA downstream 296998 2876517 ~ 2878823 (+) True CI01000021_02877008_02877864
CI01000021_02930718_02985342.mRNA mRNA downstream 351199 2930718 ~ 2985342 (+) True CI01000021_02930718_02985342
CI01000021_03044076_03086657.mRNA mRNA downstream 464557 3044076 ~ 3086657 (+) True CI01000021_03044076_03086657
CI01000021_03101146_03115161.mRNA mRNA downstream 521434 3100953 ~ 3115468 (+) True CI01000021_03101146_03115161
TU132002 other upstream 246010 2289817 ~ 2297195 (+) True G116236
TU131419 other upstream 1208796 1333998 ~ 1334409 (+) True G115691
TU131221 other upstream 2059241 480530 ~ 483964 (+) True G115519
TU133219 other downstream 658335 3237854 ~ 3243364 (+) True G117237
TU133183 other downstream 689625 3269144 ~ 3328233 (+) False G117202
TU133182 other downstream 744753 3324272 ~ 3328233 (+) True G117202
TU133500 other downstream 1376627 3956146 ~ 3957752 (+) True G117484
TU133514 other downstream 1453481 4033000 ~ 4035676 (+) True G117493

Expression Profile