Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU133017 |
| length | 1001 |
| lncRNA type | antisense_over |
| GC content | 0.46 |
| exon number | 6 |
| gene id | G117073 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000021 |
| NCBI id | null |
| chromosome length | 7014339 |
| location | 2812483 ~ 2816693 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU132094 | lncRNA | upstream | 232964 | 2543205 ~ 2579519 (+) | True | G116277 |
| TU132089 | lncRNA | upstream | 245835 | 2558740 ~ 2566648 (+) | False | G116273 |
| TU132090 | lncRNA | upstream | 245835 | 2562480 ~ 2566648 (+) | True | G116273 |
| TU132141 | lncRNA | upstream | 272155 | 2540114 ~ 2540328 (+) | True | G116324 |
| TU132137 | lncRNA | upstream | 276919 | 2535088 ~ 2535564 (+) | True | G116320 |
| TU132970 | lncRNA | downstream | 1768 | 2818461 ~ 2839917 (+) | True | G117031 |
| TU133020 | lncRNA | downstream | 3896 | 2820589 ~ 2865155 (+) | True | G117075 |
| TU133096 | lncRNA | downstream | 51118 | 2867811 ~ 2868128 (+) | True | G117137 |
| TU133097 | lncRNA | downstream | 53262 | 2869955 ~ 2870327 (+) | True | G117138 |
| TU133139 | lncRNA | downstream | 72546 | 2889239 ~ 2889861 (+) | True | G117161 |
| CI01000021_02581650_02610697.mRNA | mRNA | upstream | 200876 | 2581650 ~ 2611607 (+) | True | CI01000021_02581650_02610697 |
| CI01000021_02495559_02501217.mRNA | mRNA | upstream | 310756 | 2495559 ~ 2501727 (+) | True | CI01000021_02495559_02501217 |
| CI01000021_02402058_02447882.mRNA | mRNA | upstream | 364601 | 2401679 ~ 2447882 (+) | True | CI01000021_02402058_02447882 |
| CI01000021_02378299_02383589.mRNA | mRNA | upstream | 428723 | 2378044 ~ 2383760 (+) | True | CI01000021_02378299_02383589 |
| CI01000021_02346223_02369457.mRNA | mRNA | upstream | 441394 | 2346005 ~ 2371089 (+) | True | CI01000021_02346223_02369457 |
| CI01000021_02877008_02877864.mRNA | mRNA | downstream | 59824 | 2876517 ~ 2878823 (+) | True | CI01000021_02877008_02877864 |
| CI01000021_02930718_02985342.mRNA | mRNA | downstream | 114025 | 2930718 ~ 2985342 (+) | True | CI01000021_02930718_02985342 |
| CI01000021_03044076_03086657.mRNA | mRNA | downstream | 227383 | 3044076 ~ 3086657 (+) | True | CI01000021_03044076_03086657 |
| CI01000021_03101146_03115161.mRNA | mRNA | downstream | 284260 | 3100953 ~ 3115468 (+) | True | CI01000021_03101146_03115161 |
| CI01000021_03119361_03125084.mRNA | mRNA | downstream | 302668 | 3119361 ~ 3126781 (+) | True | CI01000021_03119361_03125084 |
| TU132002 | other | upstream | 515288 | 2289817 ~ 2297195 (+) | True | G116236 |
| TU131419 | other | upstream | 1478074 | 1333998 ~ 1334409 (+) | True | G115691 |
| TU131221 | other | upstream | 2328519 | 480530 ~ 483964 (+) | True | G115519 |
| TU133219 | other | downstream | 421161 | 3237854 ~ 3243364 (+) | True | G117237 |
| TU133183 | other | downstream | 452451 | 3269144 ~ 3328233 (+) | False | G117202 |
| TU133182 | other | downstream | 507579 | 3324272 ~ 3328233 (+) | True | G117202 |
| TU133500 | other | downstream | 1139453 | 3956146 ~ 3957752 (+) | True | G117484 |
| TU133514 | other | downstream | 1216307 | 4033000 ~ 4035676 (+) | True | G117493 |
